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AT5G18780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.939
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/FBD-like domains containing protein (TAIR:AT5G18770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AC068655EMBL:AK221350EMBL:AK230408EMBL:CP002688EnsemblPlants:AT5G18780EnsemblPlants:AT5G18780.1EnsemblPlants:AT5G18780.2
entrez:831996Gene3D:3.80.10.10GeneID:831996Genevisible:Q56YH2hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126HOGENOM:HOG000015216
InParanoid:Q56YH2InterPro:IPR001810InterPro:IPR006566InterPro:IPR032675iPTMnet:Q56YH2KEGG:ath:AT5G18780ncoils:Coil
OMA:NSSPEMLPaxDb:Q56YH2Pfam:PF00646Pfam:PF08387Pfam:Q56YH2Pfscan:PS50181PRIDE:Q56YH2
PRO:PR:Q56YH2PROSITE:PS50181ProteinModelPortal:Q56YH2Proteomes:UP000006548RefSeq:NP_001190332.1RefSeq:NP_197379.1SMART:SM00579
SMR:Q56YH2STRING:3702.AT5G18780.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT5G18780TMHMM:TMhelixUniGene:At.31380
UniGene:At.54909UniProt:Q56YH2
Coordinates (TAIR10) chr5:+:6264610..6266097
Molecular Weight (calculated) 50223.50 Da
IEP (calculated) 7.56
GRAVY (calculated) 0.10
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MQGRVRGSGE DRISILPEPL LCHILSFLRT KDSVRTSVLS SRWRDLWLWV PRLDLDKSDF SDDNPSASFV DKFLNFRGES YLRGFKLNTD HDVYDISTLD
101: ACLMRLDKCK IQHFEIENCF GFCILLMPLI IPMCHTLVSL KLSFVILSKF GSLSLPCLEI MHFEKVIFPS DKSAEVLIAC SPVLRDLRIS QSGDDAVEVL
201: RVCSASLKSF TLKRTDHDYV GNGEYTVVID TPRLEYLNLK DYQCQGFKIV SMSEYVRVHV DVVFEVIGGT VLSKRNIICD FLSCVSNVRY MTISRRSLEF
301: IYRHLELKPR FKFHDLARLR ATMFSNSSPE MLPVILETCP NLKHLTLELV HDSLVTEGTS GLLTVLPRCL ISSLASVDIE SPITDKATEL KLVSYLLENS
401: TTLKKLVLRL NQSCRDKYEP GLLKQVLQSP RCSSLCQLVI L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)