AT5G18770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.950 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/FBD-like domains containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/FBD-like domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G18780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6261426..6263172 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55720.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 481 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVNLMRKFAK SIGRPGTEFW RGEDMISALP DHLLCHILIF LSTDESVLTS VLSSRWRNLW KWVPRLDLNT SDFPYPNDVT CAAFIDKFLN LYNESYLREF 101: KLRIDQANFR SNVSLYEPCL GVVIKKPNVR HFQVESDLLE HWCTSEIRLT LSACQALVCL KLHLVWLNDF ESLSLPCLKI MYLEDVVFPS DAAAETLISC 201: SPVLEDLKLS LHRDDVVVVL RVYSQSLKSF TLKRAVPVYA INGAHTVLVD TPRLVYMSLI DYQFKSFKII SMSDYVKVDL DVDFELMRDE LSERNIVYDL 301: LNNFSGVRNM TISWTTLKFI HRFHDMNPLP KFRDLTRLRA TMSSDASLEV LRIVLESCPK LKHFHFTLEL VNDFPEAVIT GFSRVLPRCL VFSLESVEME 401: SPITEKATEL KLVRYFLENS ATLKKLVLLL NHESTGEKHE PGVLKQLIES PRRSSLCQFE VLAVPPNPEP WWIYVKPQRF L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)