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AT5G18760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G06330.1); Has 1350 Blast hits to 1348 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 526; Fungi - 109; Plants - 630; Viruses - 4; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:BT025559EMBL:CP002688EnsemblPlants:AT5G18760EnsemblPlants:AT5G18760.1entrez:831994
Gene3D:3.30.40.10GeneID:831994GO:GO:0008270GO:GO:0016021Gramene:AT5G18760.1hmmpanther:PTHR23012hmmpanther:PTHR23012:SF84
HOGENOM:HOG000240594InterPro:IPR011016InterPro:IPR013083InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
KEGG:ath:AT5G18760OMA:HEHCAIKPANTHER:PTHR23012Pfam:PF12906Pfscan:PS51292PhylomeDB:Q1H5A5PROSITE:PS51292
Proteomes:UP000006548RefSeq:NP_197377.2SMART:SM00744SMR:Q1H5A5STRING:3702.AT5G18760.1SUPFAM:SSF57850TAIR:AT5G18760
TMHMM:TMhelixUniGene:At.31385unipathway:UPA00143UniProt:Q1H5A5
Coordinates (TAIR10) chr5:-:6258508..6260828
Molecular Weight (calculated) 45380.90 Da
IEP (calculated) 7.59
GRAVY (calculated) 0.08
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MMEGSSIQPP RNFVLAKDSS TGSSSSSSSS QVKEQSVEDV SRSQPSGSQL DVSIQIPPKP TPSLGILRNL SLKRKASLPN YERRLLLSPS VSETSEKPLV
101: ASPITSPYWK RCLSLPSSNS AKLSLVVSTT PVSAVVHSEQ PKSNKDGLHA SVSRSLSMNR VIVRAVSFDD NKNHISNEAN GDQITPVPAE ETEEEIPEEE
201: AVCRICLDVC EEGNTLKMEC SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT NRRELTQQSS EPQSISVGQE FVVLVLISTV
301: CYFFFLEHLL IRDLNSQAIF VAAPFSFTLA LLASTFAVIL AIREYIWTYA ALEFALVALL VHLLYATLRV PVIYAMLFAG ILGFGMAMCL NLLCICYSSR
401: PVRFPRNTNL V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)