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AT5G18680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.805
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubby like protein 11
Curator
Summary (TAIR10)
Member of TLP family
Computational
Description (TAIR10)
tubby like protein 11 (TLP11); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby-like protein 9 (TAIR:AT3G06380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQFTeggNOG:KOG2502EMBL:AB493753EnsemblPlants:AT5G18680
EnsemblPlants:AT5G18680.1entrez:831986ExpressionAtlas:C0SVQ0Gene3D:3.20.90.10
GeneID:831986Gramene:AT5G18680.1hmmpanther:PTHR16517hmmpanther:PTHR16517:SF40
InterPro:IPR000007InterPro:IPR001810InterPro:IPR018066InterPro:IPR025659
KEGG:ath:AT5G18680OMA:VAHITYEPaxDb:C0SVQ0Pfam:PF00646
Pfam:PF01167Pfam:Q6NPQ1PhylomeDB:C0SVQ0PRIDE:C0SVQ0
PRINTS:PR01573PROSITE:PS01200ProteinModelPortal:C0SVQ0RefSeq:NP_197369.2
scanprosite:PS01200SMR:C0SVQ0STRING:3702.AT5G18680.1SUPFAM:SSF54518
SUPFAM:SSF81383TAIR:AT5G18680tair10-symbols:AtTLP11tair10-symbols:TLP11
UniGene:At.31402UniProt:C0SVQ0UniProt:Q6NPQ1
Coordinates (TAIR10) chr5:-:6228358..6230426
Molecular Weight (calculated) 43053.00 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.20
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI LIRVEAADGG GWPSRRSVVA CAGVCRGWRL LMNETVVVPE ISSKLTFPIS
101: LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL
201: RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP
301: RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)