suba logo
AT5G18670.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.924
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-amylase 3
Curator
Summary (TAIR10)
putative beta-amylase BMY3 (BMY3)
Computational
Description (TAIR10)
beta-amylase 3 (BMY3); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: chloroplast beta-amylase (TAIR:AT4G17090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
CAZy:GH14eggNOG:ENOG410IJGMeggNOG:ENOG410YC8NEMBL:AC051627EMBL:AF402598EMBL:AY069879EMBL:AY087036
EMBL:AY142007EMBL:CP002688EnsemblPlants:AT5G18670EnsemblPlants:AT5G18670.1entrez:831985Gene3D:3.20.20.80GeneID:831985
Genevisible:Q8VYW2GO:GO:0000272GO:GO:0005737GO:GO:0016161Gramene:AT5G18670.1hmmpanther:PTHR31352hmmpanther:PTHR31352:SF3
HOGENOM:HOG000238755InParanoid:Q8VYW2InterPro:IPR001554InterPro:IPR013781InterPro:IPR017853KEGG:00500+3.2.1.2KEGG:ath:AT5G18670
OMA:HSWYKTRPaxDb:Q8VYW2Pfam:PF01373Pfam:Q8VYW2PhylomeDB:Q8VYW2PRIDE:Q8VYW2PRINTS:PR00750
PRO:PR:Q8VYW2ProteinModelPortal:Q8VYW2Proteomes:UP000006548RefSeq:NP_197368.1SMR:Q8VYW2STRING:3702.AT5G18670.1SUPFAM:SSF51445
TAIR:AT5G18670tair10-symbols:BAM9tair10-symbols:BMY3UniGene:At.19910UniProt:Q8VYW2
Coordinates (TAIR10) chr5:+:6226138..6227999
Molecular Weight (calculated) 58283.60 Da
IEP (calculated) 5.59
GRAVY (calculated) -0.23
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVSVIGNPQ ARICRAELAY RELGFRFGSD VISGESRNRV SFCNQSSKWK EIAIRCSSRS VKCEAIVSDD ASPFLKSTPK SKSLESVKLF VGLPLDTVSD
101: CNNVNHLKAI TAGLKALKLL GVEGIELPIF WGVVEKEAAG KYEWSGYLAV AEIVKKVGLK LHASLSFHGS KQTEIGLPDW VAKIGDAEPG IYFTDRYGQQ
201: YKDCLSFAVD DVPVLDGKTP MEVYRGFCES FKSAFADYMG NTITGITLGL GPDGELKYPS HQHNAKLSGA GEFQCYDKHM LSALKGYAES TGNPLWGLGG
301: PHDAPAYDQQ PNSSSFFSDG GSWESQYGDF FLSWYSSLLT SHADRVLSVA SSAFSGIGVP LCGKLPLLHQ WHKLRSHPSE LTAGFYSSNG QDRYEAIAEI
401: FAKNSCRMII PGMDLSDEHQ SPESLSSPES LLGHIKTSCK KQGVVVSGQN SSTPVPGGFE RIVENLKDEN VGIDLFTYQR MGALFFSPEH FHAFTVFVRN
501: LSQFELSSDD QASEAEVEAE TASIGSGTGA PSLQTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)