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AT5G18660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll.
Computational
Description (TAIR10)
PALE-GREEN AND CHLOROPHYLL B REDUCED 2 (PCB2); FUNCTIONS IN: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17260EC:1.3.1.75eggNOG:COG0702eggNOG:KOG1203EMBL:AC051627EMBL:AK117151EMBL:AY085692
EMBL:BT025627EMBL:CP002688EnsemblPlants:AT5G18660EnsemblPlants:AT5G18660.1entrez:831984Gene3D:3.40.50.720GeneID:831984
Genevisible:Q1H537GO:GO:0009507GO:GO:0009534GO:GO:0009941GO:GO:0015995GO:GO:0016020GO:GO:0033728
GO:GO:0051744Gramene:AT5G18660.1gramene_pathway:1.3.1.75gramene_pathway:CHLOROPHYLL-SYNhmmpanther:PTHR14194hmmpanther:PTHR14194:SF36HOGENOM:HOG000251228
InParanoid:Q1H537IntAct:Q1H537InterPro:IPR016040iPTMnet:Q1H537KEGG:ath:AT5G18660KO:K19073OMA:LTACKPI
PaxDb:Q1H537Pfam:PF05368Pfam:PF13460Pfam:Q1H537PhylomeDB:Q1H537PRIDE:Q1H537PRO:PR:Q1H537
ProteinModelPortal:Q1H537Proteomes:UP000006548RefSeq:NP_197367.1STRING:3702.AT5G18660.1SUPFAM:SSF51735TAIR:AT5G18660tair10-symbols:PCB2
UniGene:At.21772UniPathway:UPA00668UniProt:Q1H537
Coordinates (TAIR10) chr5:-:6220872..6222125
Molecular Weight (calculated) 45895.40 Da
IEP (calculated) 7.70
GRAVY (calculated) -0.10
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLCSSFNVF ASYSPKPKTI FKDSKFISQF QVKSSPLAST FHTNESSTSL KYKRARLKPI SSLDSGISEI ATSPSFRNKS PKDINVLVVG STGYIGRFVV
101: KEMIKRGFNV IAVAREKSGI RGKNDKEETL KQLQGANVCF SDVTELDVLE KSIENLGFGV DVVVSCLASR NGGIKDSWKI DYEATKNSLV AGKKFGAKHF
201: VLLSAICVQK PLLEFQRAKL KFEAELMDLA EQQDSSFTYS IVRPTAFFKS LGGQVEIVKD GKPYVMFGDG KLCACKPISE QDLAAFIADC VLEENKINQV
301: LPIGGPGKAL TPLEQGEILF KILGREPKFL KVPIEIMDFV IGVLDSIAKI FPSVGEAAEF GKIGRYYAAE SMLILDPETG EYSEEKTPSY GKDTLEDFFA
401: KVIREGMAGQ ELGEQFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)