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AT5G18570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP1/OBG family protein
Curator
Summary (TAIR10)
Encodes AtObgC, a plant ortholog of bacterial Obg. AtObgC is a chloroplast-targeting GTPase essential for early embryogenesis. Mutations in this locus result in embryo lethality. The protein is dually localized in the stroma and the inner envelope membrane and is involved in thylakoid membrane biogenesis.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 269 (EMB269); FUNCTIONS IN: GTPase activity; INVOLVED IN: response to light stimulus, thylakoid membrane organization, embryo development, embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast stroma, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP-binding protein GTP1/OBG, C-terminal (InterPro:IPR015349), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07615.1); Has 23458 Blast hits to 23162 proteins in 3000 species: Archae - 644; Bacteria - 14053; Metazoa - 1121; Fungi - 826; Plants - 464; Viruses - 52; Other Eukaryotes - 6298 (source: NCBI BLink).
Protein Annotations
BioGrid:17251eggNOG:COG0536eggNOG:KOG1489EMBL:AC069328EMBL:AY128395EMBL:BT008421EMBL:CP002688
EnsemblPlants:AT5G18570EnsemblPlants:AT5G18570.1entrez:831975Gene3D:2.70.210.12Gene3D:3.40.50.300GeneID:831975Genevisible:Q8L7L0
GO:GO:0000287GO:GO:0003924GO:GO:0005525GO:GO:0006364GO:GO:0009416GO:GO:0009507GO:GO:0009570
GO:GO:0009658GO:GO:0009706GO:GO:0009793GO:GO:0010027Gramene:AT5G18570.1HAMAP:MF_01454hmmpanther:PTHR11702
hmmpanther:PTHR11702:SF20HOGENOM:HOG000019083InParanoid:Q8L7L0InterPro:IPR006073InterPro:IPR006074InterPro:IPR006169InterPro:IPR014100
InterPro:IPR015349InterPro:IPR027417InterPro:IPR031167iPTMnet:Q8L7L0KEGG:ath:AT5G18570ncoils:CoilOMA:VDGEMNS
PaxDb:Q8L7L0Pfam:PF01018Pfam:PF01926Pfam:PF09269Pfam:Q8L7L0Pfscan:PS51710PhylomeDB:Q8L7L0
PRIDE:Q8L7L0PRINTS:PR00326PRO:PR:Q8L7L0PROSITE:PS00905PROSITE:PS51710ProteinModelPortal:Q8L7L0Proteomes:UP000006548
RefSeq:NP_197358.2scanprosite:PS00905SMR:Q8L7L0STRING:3702.AT5G18570.1SUPFAM:0044296SUPFAM:SSF102741SUPFAM:SSF52540
SUPFAM:SSF82051TAIR:AT5G18570tair10-symbols:ATOBGCtair10-symbols:CPSAR1tair10-symbols:EMB269TIGRfam:TIGR02729TIGRfam:TIGR03595
TIGRFAMs:TIGR02729TIGRFAMs:TIGR03595UniGene:At.31411UniProt:Q8L7L0
Coordinates (TAIR10) chr5:-:6171839..6174823
Molecular Weight (calculated) 75651.80 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.58
Length 681 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISINCFF TPQALARPSR TRKIFAKPDK VSGRTRSPRK TKLQREVELK SRGGDKLQPV SDAGGEATTY TRLPPREDYY DVSLLSSSYL KVSEEVKLSE
101: SNVARVEEKI ETLREIEEEE KEKEVKSYDD DDIWGNYRRL DVFEGSSRSI DEDDEDWEDE VFEYGDETDA EKDDSEGSEL KDGEVLCFSG EEEEDEIGVK
201: EKGVPAVMRC FDRAKIYVRA GDGGNGVVAF RREKFVPFGG PSGGDGGRGG NVYVEVDGSM NSLLPFRKSV HFRAGRGEHG RGKMQSGAKG DNVVVKVAPG
301: TVVRQAREVG SEVEGEEGEE KEVLLELLHP GQRALLLPGG RGGRGNASFK SGMNKVPRIA ENGEEGPEMW LDLELKLVAD VGIVGAPNAG KSTLLSVISA
401: AQPTIANYPF TTLLPNLGVV SFDYDSTMVV ADLPGLLEGA HRGFGLGHEF LRHTERCSAL VHVVDGSAPQ PELEFEAVRL ELELFSPEIA EKPYVVAYNK
501: MDLPDAYEKW PMFQETLRAR GIEPFCMSAV QREGTHEVIS SVYELLKKYR AANAEPKALF DQANENLDHV AKKIDKERRA AINEFEVFRD SGTRAWHVVG
601: AGLQRFVQMT NWRYMDSDKR FQHVLDACGV NKSLKNMGVK EGDTVIVGEM ELIWHDSANG SSRPTDSNKT STDSVRWPQW K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)