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AT5G18550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT3G06410.1); Has 2990 Blast hits to 1278 proteins in 210 species: Archae - 0; Bacteria - 30; Metazoa - 599; Fungi - 302; Plants - 1043; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5063eggNOG:KOG1677EMBL:AC069328EMBL:AK230175
EMBL:BT010886EMBL:CP002688EnsemblPlants:AT5G18550EnsemblPlants:AT5G18550.1
entrez:831973Gene3D:4.10.1000.10GeneID:831973Genevisible:Q6NPN3
GO:GO:0003677GO:GO:0005634GO:GO:0046872Gramene:AT5G18550.1
hmmpanther:PTHR12506hmmpanther:PTHR12506:SF27HOGENOM:HOG000237733InParanoid:Q6NPN3
InterPro:IPR000571KEGG:ath:AT5G18550OMA:PYQSSGPPaxDb:Q6NPN3
Pfam:PF00642Pfam:Q6NPN3Pfscan:PS50103PhylomeDB:Q6NPN3
PRIDE:Q6NPN3PRO:PR:Q6NPN3PROSITE:PS50103ProteinModelPortal:Q6NPN3
Proteomes:UP000006548RefSeq:NP_197356.2SMART:SM00356SMR:Q6NPN3
STRING:3702.AT5G18550.1SUPFAM:SSF90229TAIR:AT5G18550UniGene:At.22535
UniProt:Q6NPN3
Coordinates (TAIR10) chr5:+:6160515..6162729
Molecular Weight (calculated) 49466.60 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.58
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MERYGGAGED ESRSDPSHEW SAQGTETGIE ASMWRLGLRG GGGGGETFPE RPDEPDCIYY LRTGVCGYGS RCRFNHPRNR APVLGGLRTE AGEFPERMGQ
101: PVCQHFMRTG TCKFGASCKY HHPRQGGGGD SVTPVSLNYM GFPLRPGEKE CSYFMRTGQC KFGSTCRYHH PVPPGVQAPS QQQQQQLSAG PTMYPSLQSQ
201: TVPSSQQYGV VLARPQLLPG SYVQSPYGYG QMVLPPGMVP YSGWNPYQAS VSAMPSPGTQ PSMGTSSVYG ITPLSPSAPA YQSGPSSTGV SNKEQTFPQR
301: PEQPECQYFM RTGDCKFGTS CRFHHPMEAA SPEASTLSHI GLPLRPGAVP CTHFAQHGIC KFGPACKFDH SLGSSSLSYS PSPSSLTDMP VAPYPSSLGT
401: LAPSSSSDQC TELISSSSIE PITTTTGGSE TVAAGVSSMT SDVSHPEPAE TNKGDSASNE AKTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)