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AT5G18540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 2026 Blast hits to 792 proteins in 129 species: Archae - 2; Bacteria - 12; Metazoa - 1126; Fungi - 267; Plants - 292; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0K7eggNOG:ENOG41129CJEMBL:BT014934EMBL:BT015633EMBL:CP002688EnsemblPlants:AT5G18540EnsemblPlants:AT5G18540.1
entrez:831972ExpressionAtlas:Q6GKY0GeneID:831972Gramene:AT5G18540.1hmmpanther:PTHR37255hmmpanther:PTHR37255:SF1HOGENOM:HOG000030330
ncoils:CoilOMA:KPPRLAHPhylomeDB:Q6GKY0Proteomes:UP000006548RefSeq:NP_197355.2STRING:3702.AT5G18540.1TAIR:AT5G18540
UniGene:At.31415UniProt:Q6GKY0
Coordinates (TAIR10) chr5:+:6153924..6155877
Molecular Weight (calculated) 18472.30 Da
IEP (calculated) 10.84
GRAVY (calculated) -1.06
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGGAIDEEL TEDEKRALRG SKFAPLTSLP SSSRSKPPRL AHPGGPLKTN KAAALAKFLE RKLQDPNGLA SIDPALVELA VKNAKDTVIS SGASSSGRRI
101: QHVASFEDVE VSSDDDKIEN TKLNKKKKKK NAKKKKEEKK KKKNKKHKQQ ITVDEDAKLK RPNKKLKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)