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AT5G18475.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.563
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC069328EMBL:AK228588EMBL:CP002688EnsemblPlants:AT5G18475EnsemblPlants:AT5G18475.1
entrez:2745987Gene3D:1.25.40.10GeneID:2745987Genevisible:Q3E9F0Gramene:AT5G18475.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF609
HOGENOM:HOG000239063InParanoid:Q3E9F0InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G18475OMA:NILIKHYPaxDb:Q3E9F0
Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q3E9F0Pfscan:PS51375PhylomeDB:Q3E9F0PRIDE:Q3E9F0
PRO:PR:Q3E9F0PROSITE:PS51375ProteinModelPortal:Q3E9F0Proteomes:UP000006548RefSeq:NP_974803.1SMR:Q3E9F0STRING:3702.AT5G18475.1
TAIR:AT5G18475TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.19705UniGene:At.63152UniProt:Q3E9F0
Coordinates (TAIR10) chr5:-:6129255..6130775
Molecular Weight (calculated) 57291.60 Da
IEP (calculated) 8.79
GRAVY (calculated) -0.20
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFTTSIINE HRRFSSSSRS WVSPICFSEK KKKPSPPPES SISPVETNPK TKFISHESAV SLMKRERDPQ GVLDIFNKAS QQKGFNHNNA TYSVLLDNLV
101: RHKKFLAVDA ILHQMKYETC RFQESLFLNL MRHFSRSDLH DKVMEMFNLI QVIARVKPSL NAISTCLNLL IDSGEVNLSR KLLLYAKHNL GLQPNTCIFN
201: ILVKHHCKNG DINFAFLVVE EMKRSGISYP NSITYSTLMD CLFAHSRSKE AVELFEDMIS KEGISPDPVT FNVMINGFCR AGEVERAKKI LDFMKKNGCN
301: PNVYNYSALM NGFCKVGKIQ EAKQTFDEVK KTGLKLDTVG YTTLMNCFCR NGETDEAMKL LGEMKASRCR ADTLTYNVIL RGLSSEGRSE EALQMLDQWG
401: SEGVHLNKGS YRIILNALCC NGELEKAVKF LSVMSERGIW PHHATWNELV VRLCESGYTE IGVRVLIGFL RIGLIPGPKS WGAVVESICK ERKLVHVFEL
501: LDSLVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)