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AT5G18470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Curculin-like (mannose-binding) lectin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G67520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-138-MONOMEReggNOG:ENOG410JT05eggNOG:ENOG41108BBEMBL:AF370223EMBL:AY099802EMBL:AY117258EMBL:CP002688
EnsemblPlants:AT5G18470EnsemblPlants:AT5G18470.1entrez:831965Gene3D:2.90.10.10GeneID:831965GO:GO:0009505GO:GO:0030246
GO:GO:0080167Gramene:AT5G18470.1hmmpanther:PTHR11795hmmpanther:PTHR11795:SF388HOGENOM:HOG000151188InterPro:IPR001480KEGG:ath:AT5G18470
OMA:SSEPCKTPfam:PF01453Pfscan:PS50927PhylomeDB:Q94K76PROSITE:PS50927Proteomes:UP000006548RefSeq:NP_197348.1
SMART:SM00108STRING:3702.AT5G18470.1SUPFAM:SSF51110TAIR:AT5G18470TMHMM:TMhelixUniGene:At.19705UniGene:At.48029
UniGene:At.63152UniProt:Q94K76
Coordinates (TAIR10) chr5:+:6127952..6129193
Molecular Weight (calculated) 45810.40 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.10
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSIVLLPF ILILIPTFLS SVFAVSPLKT DTLKPGQQLR DWEQLISADG IFTLGFFTPK DSSTSELGSA GLRYLGIWPQ SIPINLVWVG NPTESVSDSS
101: GSLSIDTNGV LKITQANAIP ILVNQRPAAQ LSLVGNVSAI LLDTGNFVVR EIRPGGVPGR VLWQSFDHPT NTLLPGMKIG FNLRTKKEVS VTSWITDQVP
201: VPGAFRLGLD PSGANQLLVW RRGEIYWSSG ILTNNGSSHL NLEVSRHYID YEFKFDSNKY MKYFSYSIKK ANSSVFSSWF LDTLGQITVT FSLSSNNSST
301: WISESSEPCK TDLKNSSAIC ITEKPTACRK GSEYFEPRRG YMMENNTGYY PFYYDDSLSA GLSDCHGTCW RNCSCIAFQA FPDGCQYWEK GSKFVPYDSF
401: NSNLVTYVLD SVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)