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AT5G18420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPKTeggNOG:KOG4508EMBL:BT033137EMBL:CP002688
EnsemblPlants:AT5G18420EnsemblPlants:AT5G18420.1entrez:831960ExpressionAtlas:B4F7Q4
GeneID:831960Gramene:AT5G18420.1HOGENOM:HOG000264251InterPro:IPR019312
KEGG:ath:AT5G18420Pfam:PF10155PhylomeDB:B4F7Q4Proteomes:UP000006548
RefSeq:NP_197343.1STRING:3702.AT5G18420.2TAIR:AT5G18420UniGene:At.31427
UniProt:B4F7Q4
Coordinates (TAIR10) chr5:-:6105638..6109337
Molecular Weight (calculated) 50320.50 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.28
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRSTMMIMR IEESAIVLSL LKSDLRPMED VLSEFDSKFE SARYLSVCNS LSMMLQDQQM FKNTERLIAF GIIYQCYSSQ KPSFNPFLSE MISAACNEQL
101: EKSERAFLLH LLQWNSYNNV KEILKLSAVD YIRSFDPSTH DFPELGELQR EYGDKADPGP SSHIFADYSL KKLLHDPDVP RGCDPNSPEF DVQAGVNPRI
201: GSGDRDEALS GFLGNLTMGG LGPRWIRPCP PRYPVHQSEL LWIDPDNKHE LVWDDKMCAD TSSGATVRDL LVKGLKVTLS PTEQEDIITE LANDPKLVFH
301: CGITPRKLPQ LVEHNPQIAV EILTKLNNST EINDYYEALG NMDMSLHSME VVNRLTTAVE LPKDFIRMYI TNCISSCENA KQDKYMQNRL VRLVCVFLQS
401: LIRNKIINVK DLFIEVQAFC IEFSRVREAA GLFRLLKQLD E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)