suba logo
AT5G18390.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC051626EMBL:AF370559EMBL:BT002595EMBL:CP002688EnsemblPlants:AT5G18390
EnsemblPlants:AT5G18390.1entrez:831957Gene3D:1.25.40.10GeneID:831957Genevisible:Q94JX6GO:GO:0005739Gramene:AT5G18390.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF863HOGENOM:HOG000242923InParanoid:Q94JX6InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G18390
OMA:RFFNWARPaxDb:Q94JX6Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q94JX6Pfscan:PS51375
PhylomeDB:Q94JX6PRIDE:Q94JX6PRO:PR:Q94JX6PROSITE:PS51375ProteinModelPortal:Q94JX6Proteomes:UP000006548RefSeq:NP_197340.1
SMR:Q94JX6STRING:3702.AT5G18390.1TAIR:AT5G18390TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.19076UniProt:Q94JX6
Coordinates (TAIR10) chr5:+:6090954..6092333
Molecular Weight (calculated) 51773.00 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.17
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLLRRYSGG SLYSILPIRA SIESTIRHFN SLEPLQSSDS TPTKGDYFAA INHVVNIVRR EIHPERSLNS LRLPVTSEFV FRVLRATSRS SNDSLRFFNW
101: ARSNPSYTPT SMEYEELAKS LASHKKYESM WKILKQMKDL SLDISGETLC FIIEQYGKNG HVDQAVELFN GVPKTLGCQQ TVDVYNSLLH ALCDVKMFHG
201: AYALIRRMIR KGLKPDKRTY AILVNGWCSA GKMKEAQEFL DEMSRRGFNP PARGRDLLIE GLLNAGYLES AKEMVSKMTK GGFVPDIQTF NILIEAISKS
301: GEVEFCIEMY YTACKLGLCV DIDTYKTLIP AVSKIGKIDE AFRLLNNCVE DGHKPFPSLY APIIKGMCRN GMFDDAFSFF SDMKVKAHPP NRPVYTMLIT
401: MCGRGGKFVD AANYLVEMTE MGLVPISRCF DMVTDGLKNG GKHDLAMRIE QLEVQLRGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)