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AT5G18290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : endoplasmic reticulum 16223486
SwissProt : endoplasmic reticulum 16381842
TAIR : endoplasmic reticulum 16223486
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16223486 (2005): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aquaporin-like superfamily protein
Curator
Summary (TAIR10)
Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER
Computational
Description (TAIR10)
SIP1;2; FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: small and basic intrinsic protein 1A (TAIR:AT3G04090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17223eggNOG:COG0580eggNOG:KOG0223EMBL:AB012246EMBL:AK117849EMBL:BT005263EMBL:CP002688
EnsemblPlants:AT5G18290EnsemblPlants:AT5G18290.1EnsemblPlants:AT5G18290.2entrez:831947Gene3D:1.20.1080.10GeneID:831947Genevisible:Q9FK43
GO:GO:0005783GO:GO:0005789GO:GO:0006833GO:GO:0015250GO:GO:0015254GO:GO:0015793GO:GO:0016021
GO:GO:0034220Gramene:AT5G18290.1Gramene:AT5G18290.2hmmpanther:PTHR19139hmmpanther:PTHR19139:SF75HOGENOM:HOG000240015InParanoid:Q9FK43
IntAct:Q9FK43InterPro:IPR000425InterPro:IPR023271KEGG:ath:AT5G18290KO:K09875OMA:ITIMEMIPANTHER:PTHR19139
PaxDb:Q9FK43Pfam:PF00230Pfam:Q9FK43PhylomeDB:Q9FK43PRIDE:Q9FK43PRINTS:PR00783PRO:PR:Q9FK43
ProteinModelPortal:Q9FK43Proteomes:UP000006548RefSeq:NP_001190329.1RefSeq:NP_197330.1SMR:Q9FK43STRING:3702.AT5G18290.1SUPFAM:SSF81338
TAIR:AT5G18290tair10-symbols:SIP1;2tair10-symbols:SIP1BTMHMM:TMhelixUniGene:At.31448UniProt:Q9FK43
Coordinates (TAIR10) chr5:-:6055198..6056407
Molecular Weight (calculated) 26037.30 Da
IEP (calculated) 10.60
GRAVY (calculated) 0.78
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAVKSALGD MVITFLWVIL SATFGIQTAA IVSAVGFHGI TWAPLVISTL VVFVSISIFT VIGNVLGGAS FNPCGNAAFY TAGVSSDSLF SLAIRSPAQA
101: IGAAGGAITI MEMIPEKYKT RIGGKPSLQF GAHNGAISEV VLSFSVTFLV LLIILRGPRK LLAKTFLLAL ATVSVFVVGS KFTRPFMNPA IAFGWAYIYK
201: SHNTWDHFYV YWISSYTGAI LSAMLFRIIF PAPPLVQKKQ KKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)