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AT5G18270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis NAC domain containing protein 87
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arabidopsis NAC domain containing protein 87 (ANAC087); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 46 (TAIR:AT3G04060.1); Has 3027 Blast hits to 3020 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3027; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJPHeggNOG:ENOG410YDQ3EMBL:AB012246EMBL:AK228369EMBL:BT005713EMBL:BT006070EMBL:CP002688
EnsemblPlants:AT5G18270EnsemblPlants:AT5G18270.1entrez:831945ExpressionAtlas:Q9FK44GeneID:831945GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005737GO:GO:0006351Gramene:AT5G18270.1hmmpanther:PTHR31744hmmpanther:PTHR31744:SF10HOGENOM:HOG000237406
InterPro:IPR003441KEGG:ath:AT5G18270OMA:MMGMVNGPfam:PF02365Pfscan:PS51005PhylomeDB:Q9FK44PROSITE:PS51005
Proteomes:UP000006548RefSeq:NP_197328.3SMR:Q9FK44STRING:3702.AT5G18270.1SUPFAM:SSF101941TAIR:AT5G18270tair10-symbols:ANAC087
UniGene:At.23511UniProt:Q9FK44
Coordinates (TAIR10) chr5:-:6041241..6042743
Molecular Weight (calculated) 38273.40 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.61
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIITCYLK EKVLNSRFTA VAMGEADLNK CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG
101: YWKATGKDKE IFKGKGCLVG MKKTLVFYRG RAPKGEKTNW VMHEYRLEGK YSYYNLPKSA RDEWVVCRVF HKNNPSTTTQ PMTRIPVEDF TRMDSLENID
201: HLLDFSSLPP LIDPSFMSQT EQPNFKPINP PTYDISSPIQ PHHFNSYQSI FNHQVFGSAS GSTYNNNNEM IKMEQSLVSV SQETCLSSDV NANMTTTTEV
301: SSGPVMKQEM GMMGMVNGSK SYEDLCDLRG DLWDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)