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AT5G18260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14180.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH3VeggNOG:ENOG410YG5IEMBL:AB012246EMBL:AY072182EMBL:AY096474EMBL:CP002688EnsemblPlants:AT5G18260
EnsemblPlants:AT5G18260.1entrez:831944Gene3D:3.30.40.10GeneID:831944GO:GO:0008270Gramene:AT5G18260.1hmmpanther:PTHR31150
hmmpanther:PTHR31150:SF9HOGENOM:HOG000152515InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G18260OMA:CCLNISFPfscan:PS50089
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_197327.1SMART:SM00184SUPFAM:SSF57850TAIR:AT5G18260UniGene:At.31453
UniGene:At.67585UniProt:Q9FK45
Coordinates (TAIR10) chr5:-:6036226..6037295
Molecular Weight (calculated) 35675.20 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.82
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDESPAFAL HSGSSRQRKS LEFRFQQSPR WAPYSSASDG NEQKTSLVNN SLTRPNSSNP QCLNEENGFD RDSTAISTSF RSLLSLSESS VPWETPTNNQ
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)