AT5G18220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : O-Glycosyl hydrolases family 17 protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G04010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6018914..6020453 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53868.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.93 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNRRKQSTT AGIFLCITIV SLLSGDVSAL GVNWGTMSTH QLPPKTVVQM LKDNNVKKVK LFDADTNTMV ALAGSGIEVM VAIPNDQLKA MGSYNRAKDW 101: VRRNITRFND DVKIKYVAVG NEPFLTAYNG SFINLTYPAL FNIQKALNEA GVGDFIKATV PLNADVYNSP LENPVPSAGS FRQDIFEEMK LIVNFLAHNK 201: APFTVNIYPF LSLYLSSDFP FDYAFFNGQN TVSDNGVIYT NVFDANFDTL LASLKALGHG DMTVIVGEVG WPTDGDKNAN IPNAERFYTG LLPKLAANRG 301: TPMRPGYIEV YLFGFIDEDA KSIAPGNFER HWGIFKYDGQ PKFPADLSGA GQKKILTGAQ NVQYLRNQWC MFNPNALTFS NNTNQLGDNV NYACTFSDCT 401: ALGYGSSCGN LDEVGNASYA FNMYFQVQNQ KAEACDFEGL AIITTRNISR EQCNFPIQIG DPTSGHSDHN HRFISFSLVS MLLLFTAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)