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AT5G18210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Polyketide synthase/Fatty acid synthase, KR (InterPro:IPR020842), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03980.1); Has 123037 Blast hits to 122812 proteins in 3600 species: Archae - 990; Bacteria - 80816; Metazoa - 6327; Fungi - 6724; Plants - 2865; Viruses - 2; Other Eukaryotes - 25313 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1028eggNOG:KOG0725EMBL:CP002688EnsemblPlants:AT5G18210
EnsemblPlants:AT5G18210.1entrez:831939Gene3D:3.40.50.720GeneID:831939
GO:GO:0016491Gramene:AT5G18210.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF522
InParanoid:F4JWJ4InterPro:IPR002347InterPro:IPR016040InterPro:IPR020904
iPTMnet:F4JWJ4KEGG:ath:AT5G18210KO:K00059OMA:VHYSGNK
PANTHER:PTHR24322PaxDb:F4JWJ4Pfam:PF00106PRINTS:PR00080
PRINTS:PR00081PROSITE:PS00061ProteinModelPortal:F4JWJ4Proteomes:UP000006548
Reactome:R-ATH-5661270RefSeq:NP_197322.2scanprosite:PS00061SMR:F4JWJ4
STRING:3702.AT5G18210.1SUPFAM:SSF51735TAIR:AT5G18210UniGene:At.31456
UniProt:F4JWJ4
Coordinates (TAIR10) chr5:+:6017865..6018919
Molecular Weight (calculated) 29208.20 Da
IEP (calculated) 9.50
GRAVY (calculated) 0.08
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSVSSLAG RVAIVTGSSR GIGRAIAIHL AELGAKIVIN YTTRSTEADQ VAAEINSSAG TVPQPIAVVF LADISEPSQI KSLFDAAEKA FNSPVHILVN
101: SAGILNPNYP TIANTPIEEF DRIFKVNTRG SFLCCKEAAK RLKRGGGGRI ILLTSSLTEA LIPGQGAYTA SKAAVEAMVK ILAKELKGLG ITANCVSPGP
201: VATEMFFDGK SEETVMNIIE RSPFGRLGET KDIASVVGFL ASDGGFKLQF SGDTRISNIL QCINNAKTTK KQNWKSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)