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AT5G18140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G22360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2214eggNOG:ENOG410IRXBEMBL:AB012246EMBL:AY093186EMBL:BT003386EMBL:CP002688EnsemblPlants:AT5G18140
EnsemblPlants:AT5G18140.1entrez:831932Gene3D:1.10.287.110GeneID:831932GO:GO:0009507GO:GO:0016021Gramene:AT5G18140.1
hmmpanther:PTHR24078hmmpanther:PTHR24078:SF231HOGENOM:HOG000090997InterPro:IPR001623InterPro:IPR018253KEGG:ath:AT5G18140OMA:CLSFASW
Pfam:PF00226Pfscan:PS50076PhylomeDB:Q9FK56PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076Proteomes:UP000006548
RefSeq:NP_197315.1scanprosite:PS00636SMART:SM00271SMR:Q9FK56STRING:3702.AT5G18140.1SUPFAM:SSF46565TAIR:AT5G18140
TMHMM:TMhelixUniGene:At.27967UniGene:At.43144UniProt:Q9FK56
Coordinates (TAIR10) chr5:+:5998235..5999699
Molecular Weight (calculated) 37619.90 Da
IEP (calculated) 10.07
GRAVY (calculated) -0.37
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTHLLVGPI PLKGYRRFSS SSFSGDLLPP SSNPIGRDLF PHRRRHRDGK SRSYRNRSKT TITSAAFSSS SNTGGQNHYA VLGIARNATQ GDIKRAYRLL
101: ARKFHPDVNK DSKAGELFKS VRCSYEVLSN EATRTQYDRA LKLQENSRFH RVKRHSYTPE VEDAMKYYYT WSEKRQRSRH GRFYGHYSTY PNSHFYAETE
201: PQEEEGVETA PDQRDSFVEA LKSAFLSMFL LYTFGCLASL TFSTFTALLD KELDMGYKVG FMIAWILGGK GGILLTLCLT FASWLCGKAS SSVVVLVLVA
301: MWVGSNLARH APLPQGALLT LLYMSIKLQV DST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)