suba logo
AT5G18130.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.535
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:831931eggNOG:ENOG410IXM9eggNOG:ENOG410YZPNEMBL:AB012246EMBL:AY040025EMBL:AY079372EMBL:CP002688
EnsemblPlants:AT5G18130EnsemblPlants:AT5G18130.1entrez:831931ExpressionAtlas:Q9FK57GeneID:831931GO:GO:0016021Gramene:AT5G18130.1
hmmpanther:PTHR33646hmmpanther:PTHR33646:SF2HOGENOM:HOG000091166KEGG:ath:AT5G18130OMA:DEIMGSEPhylomeDB:Q9FK57Proteomes:UP000006548
RefSeq:NP_197314.1STRING:3702.AT5G18130.1TAIR:AT5G18130TMHMM:TMhelixUniGene:At.7548UniProt:Q9FK57
Coordinates (TAIR10) chr5:+:5995634..5997165
Molecular Weight (calculated) 31431.70 Da
IEP (calculated) 4.50
GRAVY (calculated) -0.59
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLEDWEILP KINYKGLELD LGHEEDHEVT KMMRNTAKSF DSDYFICPIQ DSVGKTEFLH QRSSVVPTQL LQIPITWEPL SPVDDKDHNK YLDPDFSEPD
101: PELLTESFPS PRITFKKSKE TEFADMKIDS PAARFTSPLP QNDERHSDSE GGLGGESYDE IMGSEVEESS DLSSKKEVDW DEGERTNLWK KGLNGIGAIC
201: SFGVAAAAAT ICVFFLGHNS SIQGGRNKNQ ILRFQIYSDD NKRMNEVVKH ATKLNEAISV MKGLPVARAQ ISFGGYYDAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)