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AT5G18040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB015473EMBL:AY050965EMBL:AY096752EMBL:CP002688
EnsemblPlants:AT5G18040EnsemblPlants:AT5G18040.1entrez:831925GeneID:831925
GO:GO:0006979Gramene:AT5G18040.1HOGENOM:HOG000148670KEGG:ath:AT5G18040
OMA:FACHIPRPhylomeDB:Q9FJF8Proteomes:UP000006548RefSeq:NP_197305.1
STRING:3702.AT5G18040.1TAIR:AT5G18040UniGene:At.26539UniProt:Q9FJF8
Coordinates (TAIR10) chr5:+:5972956..5973975
Molecular Weight (calculated) 28551.10 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.24
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MNMIQRFMQS MAKTRGLCHP DCVKASSEQE DYDASQLSIW WIMLGRKTTR EKWMNQALSS LSKTCISIWW KMSGIRGKMC REREQPLTVK DCLECAFKKG
101: LPRREHWAHV GCTFKAPPFA CHIPRVPMKG EVIETKSLDE AFKLLIKQPV GARLHVFSPD LDNVGEGVYE GLSSLSRKES RYVGLRDVII VAVNKSEGKT
201: VATVKICYKK KTSFVKVCLS RMFVQLGGGE ESQVKEPTGL LVDFCIPRLS IN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)