AT5G17930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MIF4G domain-containing protein / MA3 domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 15897 Blast hits to 11268 proteins in 674 species: Archae - 101; Bacteria - 729; Metazoa - 6896; Fungi - 1567; Plants - 651; Viruses - 76; Other Eukaryotes - 5877 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5940131..5943952 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90011.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||
| Length | 784 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSSRHEKRK EARLQKNQKK HESWLQRHKS EKEKRVSSSA SAQKSGDVIK SEDFRQISDS VTEHMESSSP SGNKDHGKSF IPKKEEVRVK SKEKKMQKVE 101: RIKDLNRPRK KTNFEEFLEM DTPTVISGDQ DAELERRLAK KLKIKKGKLR GMDDGLNDLF EGLPSVLDSM GSELGDSRKK RKKKRSEEKQ DHEDVDELAN 201: EDLEHEESEF SDEESEEEPV GKRDRKRHKK KKKSVDEELE SDLMNITDDG ESETVNYHDS PSSLEKVDTP LHERKPESSS KYVAPHLRSQ AKSESEELTK 301: MRTRIKGLLN KMAESNVETI TAELATIYRS VARSVSSQIF CEEVLTTYAR GNEQYAVFAS FIAGMACLVG MDFSAKLIAS LAKSFEDEYQ KEDSLSLNGI 401: SLLLSYLCIL GVCSSDLIYD FLMTLGKRLT KVDAFTITTV LDCCGMKIRS DDPLAMKTFI ISIQNKANEL KTSSDGQTQM NNMMMEKMLE TISAIKNNKL 501: RAKEDSVQNT RVKKWLQKLR VEEVLLRGLT WSKLLDPEKK GQWWLSGDLV VDSNTAEDIA ETMDAEVVEA QKMLKLAEAQ RMNTDSRKAI FCVIMSSEDY 601: IDAFEKLLRL DLPGKQDREI MRVLVECCLQ EKAFNKFYTV LASKLCEHDK NHKFTLQYCI WDHFKELESM SLQRSMHLAK FVAEIIVTFN LSLAVLKSVD 701: LANPVELTPK RIMHFRMLFE AIFEHPENLV WNLFTRIALN PEYEALRDGI KFFVKEYVVK NNKAIYGKFR KAKEALNNAE GLLM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)