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AT5G17910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.752
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHFDeggNOG:ENOG410YCIPEMBL:AB011480EMBL:CP002688
EnsemblPlants:AT5G17910EnsemblPlants:AT5G17910.1EnsemblPlants:AT5G17910.2entrez:831659
GeneID:831659GO:GO:0016021Gramene:AT5G17910.1Gramene:AT5G17910.2
hmmpanther:PTHR33870hmmpanther:PTHR33870:SF4HOGENOM:HOG000152525KEGG:ath:AT5G17910
ncoils:CoilOMA:HDEEKSHProteomes:UP000006548RefSeq:NP_001190328.1
RefSeq:NP_197293.1TAIR:AT5G17910TMHMM:TMhelixUniGene:At.9247
UniProt:Q9FKN5
Coordinates (TAIR10) chr5:+:5927906..5932292
Molecular Weight (calculated) 149607.00 Da
IEP (calculated) 3.93
GRAVY (calculated) -0.84
Length 1342 amino acids
Sequence (TAIR10)
(BLAST)
0001: MISDRSEFRV QIRRLFMIMI RTSYKWICNH PFLLGFVAFL YYLHRYCPLL FAPLVTASPV LVCTFVLLGT ILSFGEPNIP EIEKDPEIFH EAAPLRTEVS
0101: RDANVTVVDR GGDESFTVES FVGAEKVVLE DGNDDAERLV DSQFSEVEDD GRPFDYRPLV DETLDEIKRD THVRFEEKAF ILDVEKKGDR EDEKLIENDG
0201: TGAEQSRTNG SLYERMDDQM DVSPVSPWRP MRHEEDEDDD ADRDDSLDSG SDGAESSSPD ASMTDIIPML DELHPLLLSE APTRGIVDGE GSDAASEGPH
0301: RSSSDEGMES DGDSESHGEE GDNENEDEEE DEEEEDEEEK QEKKEDKDDE SKSAIKWTEA DQRNVMDLGS LELERNQRLE NLIARRRARH NMRLMAERNL
0401: IDFDSADIPF NMPPISTARH NPFDVSYDSY DDMPIPGSAP SIMFARRNPF DLPYEPNEEK PDLKGDGFQE EFSSQQPKDP MFRRHESFSV GPSMLGGPRH
0501: DRLRPFFVLE RLANEGTSYY PFERQLSEVS ESKVSSIPDT ESVCTVLEDD EKKVDENNAD RETKIAKVDM VSDNDEENNH SASDHDEENS HSASDHDEEK
0601: SHSSEDSDFD EQADSKKLHH DVAEIVLGSG ETHHEQSDMM EGETSDKGKL DEVSDSDSSL SEKEEKIRDI SEDEAMLISE QVVDLHEELG ASSLPSFGEL
0701: EINMARGVED DYHHDEARAE ESFITAHPSL DESAIHVLCG LGDGDHEEPV YDSSPPSGSR FPSFSSVSSD YKPDLPEKNG EEIEENEEKE REVYSESIGP
0801: EEIHSTSNET ETRTSEVGEN SMHVTGEASL VMREHSTPLE ESPDVVHDIA ETSVNKSVVE EIMYEEEEAQ KQKDEVSPQT FNADIPIDSY ASLSSGAVEY
0901: VETHSFNDED VAQLEQEPVH SLVHDAEEET HNDQTMDIEV DSVNASAQNV GSEETSPSES DRELTWSDKS VVEQSSLEPG DDQVPTRAGP VSVVFSRNIT
1001: FHEYHDAPED TTELSCLTSD TSSSPTESPE YTTPMVGEGS RAEFFQEDIY EELDHVVERL EQLTDLHAIS QSPPEIITEE ADEIKEIDEG LLSELDSIGD
1101: FNVKEVVTDT EPGPSSIENA MNQAVVESME KQPKSPQSDS RSGEIMCAVE TKPSESSVDE SSIDETNVIT TSDVLPVVAR SLEEFPQPSE PKEGISMEII
1201: SESVMIPTEA TGPGNVTVID EVVTEETKAE TTEKEEEGEE EEESKPKEIT KSDVLLVETR ALEEFPKPSE LKKGMAMEVI SEGVVIPTKA AGPSNVTLSD
1301: EVVTEKAKAE TTASNTDANV QSPESKETPE NSVETIAEQK GK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)