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AT5G17790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (Ran-binding) family protein
Curator
Summary (TAIR10)
Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.
Computational
Description (TAIR10)
VARIEGATED 3 (VAR3); FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G55040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16923eggNOG:ENOG410YNCKeggNOG:KOG4198EMBL:AB006706EMBL:AY050223EMBL:AY075645EMBL:BT002233
EMBL:CP002688EnsemblPlants:AT5G17790EnsemblPlants:AT5G17790.1entrez:831647Gene3D:4.10.1060.10GeneID:831647Genevisible:Q8S9K3
GO:GO:0008270GO:GO:0009507GO:GO:0009570GO:GO:0009658GO:GO:1900871Gramene:AT5G17790.1hmmpanther:PTHR23111
hmmpanther:PTHR23111:SF30HOGENOM:HOG000082950InParanoid:Q8S9K3IntAct:Q8S9K3InterPro:IPR001876KEGG:ath:AT5G17790MINT:MINT-8066477
OMA:RGDWICQPaxDb:Q8S9K3Pfam:PF00641Pfam:Q8S9K3Pfscan:PS50199PhylomeDB:Q8S9K3PRIDE:Q8S9K3
PRO:PR:Q8S9K3PROSITE:PS01358PROSITE:PS50199ProteinModelPortal:Q8S9K3Proteomes:UP000006548RefSeq:NP_197281.1scanprosite:PS01358
SMART:SM00547SMR:Q8S9K3STRING:3702.AT5G17790.1SUPFAM:SSF90209TAIR:AT5G17790tair10-symbols:VAR3UniGene:At.31509
UniProt:Q8S9K3
Coordinates (TAIR10) chr5:-:5869810..5872671
Molecular Weight (calculated) 85949.50 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.75
Length 758 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)