AT5G17730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.855 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G17740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5852498..5853999 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54006.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||
| Length | 470 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSLRNLPSL APFVSAYASL TGYVMMIKPF LEMTIPPPLQ NYMISYLNSF LHSTPSTLTL IIDDHIKNGM YNELYGAAQV YISTKVNHNA ERLRISRDRS 101: EKNVNIHFSV GEVVSDIYQG IEVKWRFCVD SNKSNMVHYF GEHFKLNPDR ECVELSFEKK HTELVLNSYI PYVESKAKVI NNERKILKMY SYCCMYLKWQ 201: SVNLEHPSTF DTMAMNEELK RSVMGDLDRF IRRKDFYKRV GKPWKRGYLL YGPPGTGKTS LVAAIANYLK FDIYDLQLAS VREDADLRRL LLGTTNSSIL 301: LVEDIDCAVD LHTRLQPKTQ DDTKGSSMLT LSGLLTCIDG LWSSCGDERI VIFTTTHKER LDPALLRPGR MDMHIHMGHC CFDVFKTLAS NYLGLSHDDP 401: HHLYPEIERL IKGEVLTPAQ VAEELMKNED PDVALEGLVK VLKRKRLELE KYDGETGRGG LRKPELQFFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)