suba logo
AT5G17710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Co-chaperone GrpE family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1241 (EMB1241); FUNCTIONS IN: copper ion binding; INVOLVED IN: protein folding, embryo development ending in seed dormancy; LOCATED IN: thylakoid, chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: Co-chaperone GrpE family protein (TAIR:AT1G36390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0576eggNOG:KOG3003EMBL:AF370286EMBL:AY063054
EMBL:CP002688EnsemblPlants:AT5G17710EnsemblPlants:AT5G17710.1entrez:831638
ExpressionAtlas:Q94K56Gene3D:2.30.22.10Gene3D:3.90.20.20GeneID:831638
GO:GO:0000774GO:GO:0005759GO:GO:0006457Gramene:AT5G17710.1
HAMAP:MF_01151hmmpanther:PTHR21237hmmpanther:PTHR21237:SF27HOGENOM:HOG000252083
InterPro:IPR000740InterPro:IPR009012InterPro:IPR013805KEGG:ath:AT5G17710
KO:K03687ncoils:CoilPANTHER:PTHR21237Pfam:PF01025
PhylomeDB:Q94K56PRINTS:PR00773PROSITE:PS01071Proteomes:UP000006548
RefSeq:NP_568356.1scanprosite:PS01071SMR:Q94K56STRING:3702.AT5G17710.2
SUPFAM:0036470SUPFAM:0053405SUPFAM:SSF51064TAIR:AT5G17710
tair10-symbols:EMB1241UniGene:At.23846UniGene:At.7324UniProt:Q94K56
Coordinates (TAIR10) chr5:-:5839560..5841639
Molecular Weight (calculated) 35495.40 Da
IEP (calculated) 4.25
GRAVY (calculated) -0.41
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLLKTPSL HLTPTLLHAP SVPFKPFCVS FAGGRNVSVS LSRRASLRSV SSGYPLRLLN LVPFASGEAE TTETEVESNE PEETDGAVDV ENENASAEEG
101: EAEEEEAAVI TALLKSYKEA LADNNEGKIA EIEASLKSIE DEKFLLADKV ASLSNELSVE RDRLIRISAD FDNFRKRTER ERLNLVSNAQ GEVVENLLAV
201: LDNFERAKSQ IKVETEGEEK VTNSYQSIYK QFVEILGSLG VIHVETVGKQ FDPMLHEAIM REDSAEYEEG IVLEEYRKGF LLGERLLRPS MVKVSAGPGP
301: EKPLEAEGEE ATAQGSAEEE SSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)