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AT5G17700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.842
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G03620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AB006706EMBL:AY099666EMBL:BT000259EMBL:CP002688EnsemblPlants:AT5G17700
EnsemblPlants:AT5G17700.1entrez:831637GeneID:831637Genevisible:Q8L616GO:GO:0015238GO:GO:0015297GO:GO:0016021
Gramene:AT5G17700.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF154HOGENOM:HOG000177025InParanoid:Q8L616IntAct:Q8L616InterPro:IPR002528
KEGG:ath:AT5G17700KO:K03327OMA:AGMQSMVPaxDb:Q8L616Pfam:PF01554PhylomeDB:Q8L616PRIDE:Q8L616
ProteinModelPortal:Q8L616Proteomes:UP000006548RefSeq:NP_197272.2SMR:Q8L616STRING:3702.AT5G17700.1TAIR:AT5G17700TIGRfam:TIGR00797
TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.7323UniProt:Q8L616
Coordinates (TAIR10) chr5:-:5831025..5833415
Molecular Weight (calculated) 54622.60 Da
IEP (calculated) 5.75
GRAVY (calculated) 0.68
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGGGGEMEE RLLNGSETEQ RRESLYLRKK IWSEVRKMWR IALPSTLFRV MSFGCVVVAQ AFIGHSSETG LAAYALLQST FIRFIYGIMA GMSSATETLC
101: GQAYGAEQYH MMGIYLQRSW IVDTFIATLF VPFIVLAGPI LRLLGQNVVI SETVDEIYPW VIPYLYSIVF TMTMQMYLQA QMKNAIIGIL STLALVLDIA
201: ATWWCVSVMG MGIHGALLGL NISSWSVAIA EFVYVFGGWC PHTWTGFSTA AFLDLIPMLK LSISSGFMLC LEYWYMSIIV LMSGYAKDAN IAISAFSICQ
301: YIYSWEMNIC FGLMGAACVR VANELGKGDA DAVRFSIKVV LVVSAVIGVI CSALCLAFGG QISYLFSDSQ AVSDAVADLS IVLSISILFN IIQPILSGVA
401: IGAGMQSMVA LVNLASYYAI GVPLGVLLVY VFNFGIKGLW SGMLAGVGIQ TLILCYVIYK TDWELEVKKT NERMKTWTLN LPAVQSTTIS TRDEERK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)