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AT5G17690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : like heterochromatin protein (LHP1)
Curator
Summary (TAIR10)
Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.
Computational
Description (TAIR10)
TERMINAL FLOWER 2 (TFL2); CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), Chromo domain-like (InterPro:IPR016197), Chromo shadow, subgroup (InterPro:IPR018125), Chromo domain (InterPro:IPR000953); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16911eggNOG:ENOG4111JKDeggNOG:KOG1911EMBL:AB006706EMBL:AB073490EMBL:AF387639EMBL:CP002688
EnsemblPlants:AT5G17690EnsemblPlants:AT5G17690.1entrez:831635ExpressionAtlas:Q946J8GeneID:831635Genevisible:Q946J8GO:GO:0000791
GO:GO:0003677GO:GO:0003935GO:GO:0005720GO:GO:0006325GO:GO:0006342GO:GO:0006351GO:GO:0009507
GO:GO:0009648GO:GO:0009825GO:GO:0009908GO:GO:0009910GO:GO:0010016GO:GO:0010048GO:GO:0016568
GO:GO:0030154GO:GO:0035064GO:GO:0045814GO:GO:0045857GO:GO:0048573Gramene:AT5G17690.1hmmpanther:PTHR22812
hmmpanther:PTHR22812:SF80HOGENOM:HOG000078802InParanoid:Q946J8IntAct:Q946J8InterPro:IPR000953InterPro:IPR008251InterPro:IPR016197
InterPro:IPR017984InterPro:IPR023779InterPro:IPR023780iPTMnet:Q946J8KEGG:ath:AT5G17690OMA:RIARMGNPaxDb:Q946J8
Pfam:PF00385Pfam:PF01393Pfam:Q946J8Pfscan:PS50013PhylomeDB:Q946J8PRIDE:Q946J8PRINTS:PR00504
PRO:PR:Q946J8PROSITE:PS00598PROSITE:PS50013ProteinModelPortal:Q946J8Proteomes:UP000006548RefSeq:NP_197271.1scanprosite:PS00598
SMART:SM00298SMART:SM00300SMR:Q946J8STRING:3702.AT5G17690.1SUPFAM:SSF54160TAIR:AT5G17690tair10-symbols:LHP1
tair10-symbols:TFL2UniGene:At.7322UniProt:Q058P7UniProt:Q946J8
Coordinates (TAIR10) chr5:-:5827504..5829537
Molecular Weight (calculated) 48647.20 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.97
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGASGAVKK KPQVLNEAGE AETAVETVGE SRKISGDGGF GSDDGGGGGG GGSGESILRE IGDDRPTEDG DEEEEEDEDE DDGGDEEDEE GEGEGGQEER
101: PKLDEGFYEI EAIRRKRVRK GKVQYLIKWR GWPETANTWE PLENLQSIAD VIDAFEGSLK PGKPGRKRKR KYAGPHSQMK KKQRLTSTSH DATEKSDSST
201: SLNNSSLPDI PDPLDLSGSS LLNRDVEAKN AYVSNQVEAN SGSVGMARQV RLIDNEKEYD PTLNELRGPV NNSNGAGCSQ GGGIGSEGDN VRPNGLLKVY
301: PKELDKNSRF IGAKRRKSGS VKRFKQDGST SNNHTAPTDQ NLTPDLTTLD SFGRIARMGN EYPGVMENCN LSQKTKIEEL DITKILKPMS FTASVSDNVQ
401: EVLVTFLALR SDGKEALVDN RFLKAHNPHL LIEFYEQHLK YNRTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)