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AT5G17620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.920
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFP5eggNOG:ENOG4110ZX5EMBL:AK220925EMBL:AK227456
EMBL:AK227507EMBL:AL391151EMBL:AY086231EMBL:BT033086
EMBL:CP002688EnsemblPlants:AT5G17620EnsemblPlants:AT5G17620.1entrez:831628
GeneID:831628Genevisible:Q0WTP1GO:GO:0005876GO:GO:0007067
GO:GO:0009524GO:GO:0051011GO:GO:0051301Gramene:AT5G17620.1
hmmpanther:PTHR14352hmmpanther:PTHR14352:SF2HOGENOM:HOG000030689InterPro:IPR010604
InterPro:IPR029711KEGG:ath:AT5G17620ncoils:CoilOMA:RGSYEDR
PANTHER:PTHR14352:SF2PaxDb:Q0WTP1Pfam:PF06694PhylomeDB:Q0WTP1
PIR:T51466PIRSF:PIRSF028655PRIDE:Q56ZN8Proteomes:UP000006548
RefSeq:NP_568354.1STRING:3702.AT5G17620.1TAIR:AT5G17620UniGene:At.31525
UniProt:Q0WTP1
Coordinates (TAIR10) chr5:-:5805934..5808455
Molecular Weight (calculated) 37011.20 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.24
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAKQMEEIQ KKLRLLSYPR ANAPAQSLLF AGMERYALLE WLFFKLLGDK SPFSQQNLQG DAGVRDEETV RIQYLAEIAK FLGITPTVDI EAIQGHGTYE
101: DRMEMLRNIV DLVEASLFSD NQEWSIDEQV AKDIQLIDAI AERQSLIFSE ECKLFPADVQ IQSIYPLPDV SELETKLSEQ AKILSNLQQK VDDLAAKHAY
201: NPDEEYTEVE SQLRARLESF LETARAFNTI YTKEIRPWTH MMEVPQLHGF GPAANRLLEA YNMLLKFLGN LKNLRDSHAA LSIGSSGTVA GEPSSVTRIV
301: SDCEAALTVL NRDLGILSAS IAREQGERL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)