suba logo
AT5G17610.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J02QeggNOG:ENOG4112CWXEMBL:AK175531EMBL:AK176664EMBL:BT025595EMBL:CP002688EnsemblPlants:AT5G17610
EnsemblPlants:AT5G17610.1entrez:831627GeneID:831627GO:GO:0005783Gramene:AT5G17610.1hmmpanther:PTHR35455hmmpanther:PTHR35455:SF1
HOGENOM:HOG000140917InterPro:IPR031985KEGG:ath:AT5G17610OMA:EKKSACYPfam:PF16029PhylomeDB:Q67Y04Proteomes:UP000006548
RefSeq:NP_568353.1TAIR:AT5G17610UniGene:At.31526UniProt:Q67Y04
Coordinates (TAIR10) chr5:+:5804011..5805045
Molecular Weight (calculated) 13741.70 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.07
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MEISQARSSF VCLLLLLLSM CFVPCVFSKS PRPISDVEIR QKKSECYGDI ESGLWGWQCK SSAIAKENCA LRCLSPVCYQ LIYESDPLEE GEKDLIRSQE
101: YKYCMYKSSL GESLEGVRGI F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)