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AT5G17600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16902eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK226188EMBL:AL391151EMBL:CP002688EnsemblPlants:AT5G17600
EnsemblPlants:AT5G17600.1entrez:831626Gene3D:3.30.40.10GeneID:831626Genevisible:Q9LF64GO:GO:0008270GO:GO:0016021
GO:GO:0016567Gramene:AT5G17600.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF159HOGENOM:HOG000239376InParanoid:Q9LF64InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT5G17600MINT:MINT-8066454OMA:CNIYCPQPaxDb:Q9LF64Pfam:PF13639Pfam:Q9LF64
Pfscan:PS50089PhylomeDB:Q9LF64PIR:T51464PRIDE:Q9LF64PRO:PR:Q9LF64PROSITE:PS50089ProteinModelPortal:Q9LF64
Proteomes:UP000006548RefSeq:NP_197262.1SMART:SM00184SMR:Q9LF64SUPFAM:SSF57850TAIR:AT5G17600TMHMM:TMhelix
UniGene:At.28195UniPathway:UPA00143UniProt:Q9LF64
Coordinates (TAIR10) chr5:-:5800029..5801117
Molecular Weight (calculated) 39750.90 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.41
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTNPNPWSP YDSYNDCSQG ICNIYCPQWC YLIFPPPPPS FFLDDDSSSS SSSFSPLLIA LIGILTSALI LVSYYTLISK YCHRHHQTSS SETLNLNHNG
101: EGFFSSTQRI STNGDGLNES MIKSITVYKY KSGDGFVDGS DCSVCLSEFE ENESLRLLPK CNHAFHLPCI DTWLKSHSNC PLCRAFVTGV NNPTASVGQN
201: VSVVVANQSN SAHQTGSVSE INLNLAGYES QTGDFDSVVV IEDLEIGSRN SDARSELQLP EERRETKDED SLPIRRSVSL NSGVVVSIAD VLREIEDEEG
301: ESGGVGTSQR REEGEDGDGK TIPPTEANQR SGGVSGFFVR SLSTGRFIFS RYDRGRNYRL PL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)