suba logo
AT5G17580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.638
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G03510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH3YeggNOG:ENOG4111DABEMBL:AL391151EMBL:CP002688
EnsemblPlants:AT5G17580EnsemblPlants:AT5G17580.1entrez:831624GeneID:831624
Genevisible:Q9LF66GO:GO:0016567Gramene:AT5G17580.1hmmpanther:PTHR32370
hmmpanther:PTHR32370:SF36HOGENOM:HOG000239180InParanoid:Q9LF66InterPro:IPR000210
InterPro:IPR011333InterPro:IPR027356KEGG:ath:AT5G17580ncoils:Coil
OMA:DEMEKMSPaxDb:Q9LF66Pfam:PF00651Pfam:PF03000
Pfam:Q9LF66Pfscan:PS50097Pfscan:PS51649PhylomeDB:Q9LF66
PIR:T51462PRIDE:Q9LF66PRO:PR:Q9LF66PROSITE:PS50097
PROSITE:PS51649ProteinModelPortal:Q9LF66Proteomes:UP000006548RefSeq:NP_197260.1
SMART:SM00225SMR:Q9LF66SUPFAM:SSF54695TAIR:AT5G17580
UniGene:At.46823UniPathway:UPA00143UniProt:Q9LF66
Coordinates (TAIR10) chr5:+:5795302..5797031
Molecular Weight (calculated) 62935.60 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.31
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASYVSDLH INVKGVPFHL CKEMLAKRSS KVSSLLERNE IDELRLILRD LEVDPETFEL VARFCNGSEF KFTSDTIVSV LCIAYYLGMN EEQSSNNLLG
101: KASEFLEHRV FPSWSETINA LRSGDKSFDK LADVGLVDVF FDSLIEKASY DPRLLGELIK NRAETDDYRP NPRRRLFVID WKSEDLITIP LRLYEPFMIR
201: AIKSRSIPVE YIVLSVCKYA KKWVFDTEES LSGQKREAIE VVERLLPYQR GLISCELLFE SLKHSIWLEA SSECQNGFMI RICKQLDMAK STDLKILSRG
301: YGEKAEGFEN IELVKTVVKS FYTYYANEDS ETVSHFVKVA KLSEEFLFLA ASEASLKLEA FVELAEMTVA VSQGILSYSD GIYRAIDVFL ESHRYLTESE
401: KMEVCKVLEC GKLSQEGFER AAKNQKLPLR IVVNVLCVSQ LQIRDTVAKE IKGMEEKVDE EEEEEIEVSS DEDEMEKMSN KLLGLEIEND ECVVHRRKNM
501: KKKKKKISVW GQVKRKFGCL NSSSSSYSVD ACTCDVKKKK KKIHHHYE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)