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AT5G17570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.777
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TatD related DNase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TatD related DNase; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: TatD related DNase (TAIR:AT3G03500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0084eggNOG:KOG3020EMBL:BT030015EMBL:CP002688
EnsemblPlants:AT5G17570EnsemblPlants:AT5G17570.1entrez:831623GeneID:831623
GO:GO:0016788Gramene:AT5G17570.1hmmpanther:PTHR10060HOGENOM:HOG000201519
InterPro:IPR001130InterPro:IPR032466KEGG:ath:AT5G17570KO:K03424
OMA:GVHPVQEPANTHER:PTHR10060Pfam:PF01026PhylomeDB:A2RVM4
PIRSF:PIRSF005902Proteomes:UP000006548RefSeq:NP_568352.1SMR:A2RVM4
STRING:3702.AT5G17570.1SUPFAM:SSF51556TAIR:AT5G17570UniGene:At.43361
UniProt:A2RVM4
Coordinates (TAIR10) chr5:+:5792948..5794580
Molecular Weight (calculated) 35577.40 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.19
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLFDAHCHL QDPRIITKAP QIISSAVASG VSAFAVNGVS EKDWSLVKEM GAKYPSVVPC FGIHPWYVAE RSPQWFETLK SFFETTPTAA VGEIGLDKGS
101: KGREIDFSEQ VTVFRQQLEL AKELKKPASV HCVRAFGDLL EILKSVGPFP SGVMLHSYLG SAEMVPEFAK LGAYFSFSGF LMSMSEKKAK KMLKAVPSDR
201: ILLETDSPDA LPKAESGCLY FVDGDPSLPE EGNSAQDLDS ASYDKPNVSS DSMKLTKETL NHPANIHIVL GYVAQLLDMK NEELAELSYQ NAVRLFSYEG
301: SKILLDRGTG DVSGHTQNQS TTHVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)