suba logo
AT5G17530.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphoglucosamine mutase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phosphoglucosamine mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, putative / glucose phosphomutase, putative (TAIR:AT1G70820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G17530-MONOMERBioCyc:ARA:GQT-1080-MONOMERBioCyc:ARA:GQT-1162-MONOMEReggNOG:COG1109eggNOG:KOG1220EMBL:AY061751EMBL:AY129467
EMBL:CP002688EnsemblPlants:AT5G17530EnsemblPlants:AT5G17530.1EnsemblPlants:AT5G17530.2entrez:831619ExpressionAtlas:Q8W4R0Gene3D:3.30.310.50
Gene3D:3.40.120.10GeneID:831619GO:GO:0005975GO:GO:0016868Gramene:AT5G17530.1Gramene:AT5G17530.2gramene_pathway:5.4.2.8
gramene_pathway:PWY-5659gramene_pathway:PWY-882gramene_plant_reactome:1119410gramene_plant_reactome:1119477gramene_plant_reactome:6874227gramene_plant_reactome:6874643hmmpanther:PTHR22573
hmmpanther:PTHR22573:SF18HOGENOM:HOG000040008InterPro:IPR005841InterPro:IPR005843InterPro:IPR005844InterPro:IPR005845InterPro:IPR005846
InterPro:IPR016055KEGG:00520+5.4.2.10Pfam:PF02878Pfam:PF02879Pfam:PF02880PhylomeDB:Q8W4R0PRINTS:PR00509
Proteomes:UP000006548RefSeq:NP_568350.1RefSeq:NP_850839.1SMR:Q8W4R0STRING:3702.AT5G17530.3SUPFAM:SSF53738SUPFAM:SSF55957
TAIR:AT5G17530UniGene:At.27444UniProt:Q8W4R0
Coordinates (TAIR10) chr5:+:5778168..5781863
Molecular Weight (calculated) 62878.90 Da
IEP (calculated) 6.21
GRAVY (calculated) -0.17
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTLLPCPRE KMAFNLNSSM RAHTLSKYQF VLSKQRTFYC NATSSSATVP SLDKNDFLKL QNGSDIRGVA VTGVEGEPVS LPEPVTEAIA AAFGQWLLHK
101: KKAESRRLRV SVGHDSRISA QTLLEAVSRG LGVSGLDVVQ FGLASTPAMF NSTLTEDESF LCPADGAIMI TASHLPYNRN GFKFFTSDGG LGKVDIKNIL
201: ERAADIYKKL SDENLRKSQR ESSSITKVDY MSVYTSGLVK AVRKAAGDLE KPLEGFHIVV DAGNGAGGFF AAKVLEPLGA ITSGSQFLEP DGMFPNHIPN
301: PEDKAAMEAI TKAVLDNKAD LGIIFDTDVD RSAAVDSSGR EFNRNRLIAL LSAIVLEEHP GTTIVTDSVT SDGLTSFIEK KLGGKHHRFK RGYKNVIDEA
401: IRLNSVGEES HLAIETSGHG ALKENHWLDD GAYLMVKILN KLAAARAAGQ GSGSKVLTDL VEGLEEPKVA LELRLKIDKN HPDLEGSDFR EYGEKVLQHV
501: SNSIETNPNL IIAPVNYEGI RVSGFGGWFL LRLSLHDPVL PLNIEAQSED DAVKLGLVVA TTVKEFNALD TCALSNLTHS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)