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AT5G17520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root cap 1 (RCP1)
Curator
Summary (TAIR10)
Encodes a maltose transporter that is expressed in leaves and roots. Mutations at the MEX1 locus cause accumulation of both starch and maltose in leaves, with maltose levels at least 40 times higher than that of wild-type. This gene encodes a protein located in the chloroplast envelope.
Computational
Description (TAIR10)
ROOT CAP 1 (RCP1); FUNCTIONS IN: maltose transmembrane transporter activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17523.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G17520-MONOMEReggNOG:ENOG410IJB3eggNOG:ENOG410ZKZ6EMBL:AF168390EMBL:AF168391EMBL:AL391150EMBL:AY056187
EMBL:AY084279EMBL:AY096715EMBL:CP002688EnsemblPlants:AT5G17520EnsemblPlants:AT5G17520.1entrez:831618GeneID:831618
Genevisible:Q9LF50GO:GO:0000023GO:GO:0005363GO:GO:0005975GO:GO:0005983GO:GO:0009624GO:GO:0009706
GO:GO:0009941GO:GO:0015768GO:GO:0016021Gramene:AT5G17520.1hmmpanther:PTHR34809HOGENOM:HOG000241003InParanoid:Q9LF50
iPTMnet:Q9LF50KEGG:ath:AT5G17520OMA:AYGHNSPPaxDb:Q9LF50Pfam:Q9LF50PhylomeDB:Q9LF50PIR:T51478
PRIDE:Q9LF50PRO:PR:Q9LF50ProteinModelPortal:Q9LF50Proteomes:UP000006548RefSeq:NP_568349.1STRING:3702.AT5G17520.1TAIR:AT5G17520
tair10-symbols:MEX1tair10-symbols:RCP1TCDB:2.A.84.1.1TMHMM:TMhelixUniGene:At.9964UniProt:Q9LF50
Coordinates (TAIR10) chr5:-:5772796..5775231
Molecular Weight (calculated) 45282.70 Da
IEP (calculated) 9.67
GRAVY (calculated) 0.41
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKAIATSL GGDRVLIFPC SPRSSFVFTS RLSSLPLKRA SIGGAVSCSG VNGLTRWNSI VSTRRLVPVR SINSESDSDS DFPHENQQGN PGLGKFKEYQ
101: EWDSWTAKFS GGANIPFLML QLPQIILNTQ NLLAGNNTAL SAVPWLGMLT GLLGNLSLLS YFAKKREKEA AVVQTLGVVS THIVLAQLTM AEAMPIQYFV
201: ATSAVVTIGL IVNCLYYFGK LSKTVWQLWE DVITIGGLSV LPQIMWSTFV PLVPNSILPG TTAFGIAVAA IIMARTGKLS EKGVRFVGSL SGWTATLMFM
301: WMPVSQMWTN FLNPDNIKGL SSITMLLSMM GNGLMIPRAL FIRDLMWLTG SLWATLFYGY GNILCLYLVN CTSQSFFVAA TIGLISWIGL ALWRDAVAYG
401: HNSPFRSLKE LVFGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)