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AT5G17510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK2FeggNOG:ENOG410YCATEMBL:AL391150EMBL:AY070079EMBL:AY091336EMBL:CP002688EnsemblPlants:AT5G17510
EnsemblPlants:AT5G17510.1entrez:831617GeneID:831617Gramene:AT5G17510.1hmmpanther:PTHR15572HOGENOM:HOG000244075IntAct:Q9LF51
InterPro:IPR015671KEGG:ath:AT5G17510ncoils:CoilOMA:PSNIDVHPfam:PF15249PhylomeDB:Q9LF51PIR:T51477
Proteomes:UP000006548RefSeq:NP_197253.1TAIR:AT5G17510UniGene:At.28405UniProt:Q9LF51
Coordinates (TAIR10) chr5:-:5770518..5772343
Molecular Weight (calculated) 42557.50 Da
IEP (calculated) 4.71
GRAVY (calculated) -1.19
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDTKPPLGG NNNPQQQQQQ QQLLYQHQLQ QQQRQQQMLL LQQLQKQQQQ QAAMSRFPSN IDVHLRPPGL IQNRPINPPP QQNPTPNPNL GQQTPNFQQQ
101: QQQNVSSQQM MQQQQQQQQQ QKLMRPLNHI ELQCAYQDAW RVCHPNFKQP FSSLEDACER LLPYHVVADY EAEEDDRILD SDPTGQALSR SQQWDNNIAA
201: KVAEFTATFE KQALAFNIIT RKRAMGEFRS EERLMVEQAL LQDERKALIE LKAEMDREKA GREAQEAKLR MAALAQAGQS QSHAEIMARN PLRANAVGNQ
301: GSNIQLSHEM GEQGRNMNPD EMMNGWGNNS QREDKEPSED FLNDEENENG ETGEQENWRE AGEFDLNSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)