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AT5G17380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; FUNCTIONS IN: pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: chlorsulfuron/imidazolinone resistant 1 (TAIR:AT3G48560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G17380-MONOMERBioGrid:16880EC:4.1.-.-eggNOG:COG0028
eggNOG:KOG1185EMBL:AJ278629EMBL:AK175390EMBL:AL391142
EMBL:AY099774EMBL:BT000284EMBL:CP002688EnsemblPlants:AT5G17380
EnsemblPlants:AT5G17380.1entrez:831604Gene3D:3.40.50.1220Gene3D:3.40.50.970
GeneID:831604Genevisible:Q9LF46GO:GO:0000287GO:GO:0005829
GO:GO:0016831GO:GO:0030976Gramene:AT5G17380.1hmmpanther:PTHR18968
hmmpanther:PTHR18968:SF6HOGENOM:HOG000053808InParanoid:Q9LF46InterPro:IPR000399
InterPro:IPR011766InterPro:IPR012000InterPro:IPR012001InterPro:IPR029035
InterPro:IPR029061iPTMnet:Q9LF46KEGG:ath:AT5G17380KO:K12261
OMA:GIPYLPMPaxDb:Q9LF46Pfam:PF00205Pfam:PF02775
Pfam:PF02776Pfam:Q9LF46PhylomeDB:Q9LF46PIR:T51575
PRIDE:Q9LF46PRO:PR:Q9LF46PROSITE:PS00187ProteinModelPortal:Q9LF46
Proteomes:UP000006548Reactome:R-ATH-389599RefSeq:NP_197240.1scanprosite:PS00187
SMR:Q9LF46STRING:3702.AT5G17380.1SUPFAM:SSF52467SUPFAM:SSF52518
TAIR:AT5G17380UniGene:At.25248UniProt:Q9LF46
Coordinates (TAIR10) chr5:-:5724920..5726720
Molecular Weight (calculated) 61473.90 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.06
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKSETTPP SIDGNVLVAK SLSHLGVTHM FGVVGIPVTS LASRAMALGI RFIAFHNEQS AGYAASAYGY LTGKPGILLT VSGPGCVHGL AGLSNAWVNT
101: WPMVMISGSC DQRDVGRGDF QELDQIEAVK AFSKLSEKAK DVREIPDCVS RVLDRAVSGR PGGCYLDIPT DVLRQKISES EADKLVDEVE RSRKEEPIRG
201: SLRSEIESAV SLLRKAERPL IVFGKGAAYS RAEDELKKLV EITGIPFLPT PMGKGLLPDT HEFSATAARS LAIGKCDVAL VVGARLNWLL HFGESPKWDK
301: DVKFILVDVS EEEIELRKPH LGIVGDAKTV IGLLNREIKD DPFCLGKSNS WVESISKKAK ENGEKMEIQL AKDVVPFNFL TPMRIIRDAI LAVEGPSPVV
401: VSEGANTMDV GRSVLVQKEP RTRLDAGTWG TMGVGLGYCI AAAVASPDRL VVAVEGDSGF GFSAMEVETL VRYNLAVVII VFNNGGVYGG DRRGPEEISG
501: PHKEDPAPTS FVPNAGYHKL IEAFGGKGYI VETPDELKSA LAESFAARKP AVVNVIIDPF AGAESGRLQH KN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)