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AT5G17300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Myb-like transcription factor that regulates hypocotyl growth by regulating free auxin levels in a time-of-day specific manner.
Computational
Description (TAIR10)
REVEILLE 1 (RVE1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G37260.1); Has 1557 Blast hits to 1521 proteins in 166 species: Archae - 0; Bacteria - 3; Metazoa - 201; Fungi - 29; Plants - 1060; Viruses - 9; Other Eukaryotes - 255 (source: NCBI BLink).
Protein Annotations
BioGrid:16871eggNOG:ENOG410INV4eggNOG:ENOG41123FAEMBL:AB005238EMBL:AF378860EMBL:AY050467EMBL:CP002688
EnsemblPlants:AT5G17300EnsemblPlants:AT5G17300.1entrez:831595Gene3D:1.10.10.60GeneID:831595Genevisible:F4KGY6GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0007623GO:GO:0009734GO:GO:0009851
GO:GO:0010600Gramene:AT5G17300.1hmmpanther:PTHR12802hmmpanther:PTHR12802:SF60HOGENOM:HOG000239362InParanoid:F4KGY6InterPro:IPR001005
InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G17300OMA:EDVENRCPaxDb:F4KGY6Pfam:F4KGY6
Pfam:PF00249Pfscan:PS51294PRIDE:F4KGY6PRO:PR:F4KGY6PROSITE:PS51294ProteinModelPortal:F4KGY6Proteomes:UP000006548
RefSeq:NP_568344.2SMART:SM00717SMR:F4KGY6STRING:3702.AT5G17300.1SUPFAM:SSF46689TAIR:AT5G17300tair10-symbols:RVE1
TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.21718UniProt:F4KGY6
Coordinates (TAIR10) chr5:-:5690435..5692435
Molecular Weight (calculated) 42983.10 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.85
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)