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AT5G17290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : autophagy protein Apg5 family
Curator
Summary (TAIR10)
Autophagy protein ATG5. Forms a conjugate with ATG12 with an essential role in plant nutrient recycling. Mutants missing ATG5 display early senescence and are hypersensitive to nitrogen or carbon starvation, accompanied by a more rapid loss of organellar and cytoplasmic proteins.
Computational
Description (TAIR10)
AUTOPHAGY 5 (APG5); FUNCTIONS IN: transporter activity; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 5 (InterPro:IPR007239); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16870eggNOG:ENOG410XQ71eggNOG:KOG2976EMBL:AB005238EMBL:AK117572EMBL:BT005100EMBL:CP002688
EnsemblPlants:AT5G17290EnsemblPlants:AT5G17290.1entrez:831594GeneID:831594Genevisible:Q9FFI2GO:GO:0000045GO:GO:0000422
GO:GO:0006501GO:GO:0006914GO:GO:0006995GO:GO:0010150GO:GO:0015031GO:GO:0034045GO:GO:0034274
GO:GO:0042594GO:GO:0044804GO:GO:0050832Gramene:AT5G17290.1hmmpanther:PTHR13040hmmpanther:PTHR13040:SF2HOGENOM:HOG000030712
InParanoid:Q9FFI2IntAct:Q9FFI2InterPro:IPR007239KEGG:ath:AT5G17290KO:K08339MINT:MINT-8070748OMA:KWSYMNS
PANTHER:PTHR13040PaxDb:Q9FFI2Pfam:PF04106Pfam:Q9FFI2PhylomeDB:Q9FFI2PRIDE:Q9FFI2PRO:PR:Q9FFI2
ProteinModelPortal:Q9FFI2Proteomes:UP000006548Reactome:R-ATH-1632852RefSeq:NP_197231.1SMR:Q9FFI2STRING:3702.AT5G17290.1TAIR:AT5G17290
tair10-symbols:APG5tair10-symbols:ATATG5tair10-symbols:ATG5UniGene:At.31568UniProt:Q9FFI2
Coordinates (TAIR10) chr5:-:5687160..5689821
Molecular Weight (calculated) 38479.10 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.33
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKEAVKYVW EGAIPLQIHL HKSDVASHPA PPPALVLAPR IGYLPLLIPL IKPYFKDSLP PGEDSIWFDY KGFPLKWYIP TGVLFDLLCA EPERPWNLTI
101: HFRGYPCNIL IPCEGEDSVK WNFVNSLKEA QYIINGNCKN VMNMSQSDQE DLWTSVMNGD LDAYTRLSPK LKMGTVEDEF SRKTSLSSPQ SQQVVPETEV
201: AGQVKTARIP VRLYVRSLNK DFENLEDVPE IDTWDDISYL NRPVEFLKEE GKCFTLRDAI KSLLPEFMGD RAQTSGEERS IDDTEEADGS REMGEIKLVR
301: IQGIEMKLEI PFSWVVNNLM NPEFYLHISV LVKAPQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)