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AT5G17250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.905
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alkaline-phosphatase-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alkaline-phosphatase-like family protein; FUNCTIONS IN: transferase activity, catalytic activity; INVOLVED IN: GPI anchor biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT2G22530.1); Has 1431 Blast hits to 1201 proteins in 306 species: Archae - 0; Bacteria - 228; Metazoa - 476; Fungi - 488; Plants - 85; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1524eggNOG:KOG2126EMBL:CP002688EnsemblPlants:AT5G17250
EnsemblPlants:AT5G17250.1entrez:831589Gene3D:3.40.720.10GeneID:831589
GO:GO:0003824GO:GO:0016021Gramene:AT5G17250.1hmmpanther:PTHR23071
hmmpanther:PTHR23071:SF1InParanoid:F4KGY0InterPro:IPR002591InterPro:IPR017849
InterPro:IPR017850iPTMnet:F4KGY0KEGG:ath:AT5G17250KO:K05288
ncoils:CoilOMA:FVGFDEFPaxDb:F4KGY0Pfam:PF01663
PRIDE:F4KGY0ProteinModelPortal:F4KGY0Proteomes:UP000006548RefSeq:NP_197227.4
STRING:3702.AT5G17250.1SUPFAM:SSF53649TAIR:AT5G17250TMHMM:TMhelix
UniGene:At.31577UniProt:F4KGY0
Coordinates (TAIR10) chr5:-:5668993..5673516
Molecular Weight (calculated) 102300.00 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.29
Length 925 amino acids
Sequence (TAIR10)
(BLAST)
001: METYLKNKKL TALGFLLIHA IAILIFTRGF LLTRTELPFH STCSDVSLSP CLASPRSNHD SSSGQSNQTQ PKCWTKPVVD RVIIIVLDAL RIDFVAPSAF
101: FPEPKPWMDK LTILQTLAFA NDSSAKIFKA FADPPTTSLQ RLKGLTTGGL PTFIDIGNSF GAPAIVEDNF INQLVLNGKR LVMMGDDTWT QLFPNQFQKS
201: YPFPSFNVKD LDTVDNGCIE HLFPTLFKDD WDVLIAHFLG VDHAGHIFGV DSSPMINKLE QYNSVLEKVI NILESQAGPG GLHENTMLIV MGDHGQTLNG
301: DHGGGTAEEV ETTMFAMSTK KHTTLVPPEF DTSSCKQNKD GKQMCISYIE QLDFAATLSA LLGISFPFGS IGHVNPELYA LGSSSWNLDK SDLGNFGTQS
401: AANEWMKHYV DVLCVNAWQV KRYIDVYSNS SVVGFSSDDM SRISDLYSAA EQNWSNSVKH ILMDRNGDDG STDISALLKE QIAEYLNFFS SVVELARSKW
501: TEFNLNLMIT GFGILVISLI LQFLAVFHGD KSYAVGSWLS TGAAFTLFIV TIRACSFLSN SYILEEGKVA NFLLATTGLI KLRYSVMRKT MRKEAFMFLA
601: MVFVLRVSID IGLTKQAATS QFMSSSPSWM LGIAPDHPAL TYAIEIAPIL SVVILICVLY VAIAKAPNEG VWKYVTVGSM LLQVTGGRNR IPQTVYVIGL
701: VQLCLLASAR MFCTEKDKNW AIRTVALVSA CSSPIILLSG KQGSMLALVY LVAGYCIMRL EGVERRTKSD GQSKFSKLNP LCVVQWSLLS ICMFFASGHW
801: CAFDGLRYGA AFVGFDEFVL IRQAILLTIE TFGFSIILSV FGLPLLIPFH SQTPQAHGEK RHQLFQMYML FGVISATTVT ATILCVTIQR RHLMVWGLFA
901: PKFVFDVVDL ILTDLLICLA SAYYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)