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AT5G17190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.887
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXA4eggNOG:ENOG4111X7FEMBL:AB005238EMBL:AK226491EMBL:AY063960EMBL:AY114029EMBL:CP002688
EnsemblPlants:AT5G17190EnsemblPlants:AT5G17190.1entrez:831583GeneID:831583GO:GO:0005783GO:GO:0006886GO:GO:0016021
Gramene:AT5G17190.1hmmpanther:PTHR12701hmmpanther:PTHR12701:SF12IntAct:Q9FFJ0InterPro:IPR008417KEGG:ath:AT5G17190ncoils:Coil
OMA:LSIIPFCPANTHER:PTHR12701PhylomeDB:Q9FFJ0Proteomes:UP000006548RefSeq:NP_197221.1STRING:3702.AT5G17190.1TAIR:AT5G17190
TMHMM:TMhelixUniGene:At.20834UniProt:Q9FFJ0
Coordinates (TAIR10) chr5:+:5652310..5652702
Molecular Weight (calculated) 14885.60 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.32
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MALEWVVLGY AAAAEAIMVI LLTMPGLDAL RKGLVAVTRN LLKPFLSIIP FCLFLLMDIY WKYETRPSCD GDSCTPSEHL RHQKSIMKSQ RNALLIASAL
101: VFYWILYSVT NLVVRIEQLN QRVERLKNKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)