suba logo
AT5G17170.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : rubredoxin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
enhancer of sos3-1 (ENH1); FUNCTIONS IN: electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT5G51010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH59eggNOG:ENOG4110MKEEMBL:AB005238EMBL:AY035119EMBL:BT000984EMBL:CP002688EnsemblPlants:AT5G17170
EnsemblPlants:AT5G17170.1entrez:831581ExpressionAtlas:Q9FFJ2Gene3D:2.20.28.10Gene3D:2.30.42.10GeneID:831581GO:GO:0005506
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009941GO:GO:0016021Gramene:AT5G17170.1hmmpanther:PTHR17130
HOGENOM:HOG000012648IntAct:Q9FFJ2InterPro:IPR001478InterPro:IPR004039InterPro:IPR024934OMA:DTYVCPQPfscan:PS50106
Pfscan:PS50903PhylomeDB:Q9FFJ2PROSITE:PS50106PROSITE:PS50903Proteomes:UP000006548RefSeq:NP_568342.1SMR:Q9FFJ2
STRING:3702.AT5G17170.1SUPFAM:SSF50156SUPFAM:SSF57802TAIR:AT5G17170tair10-symbols:ENH1TMHMM:TMhelixUniGene:At.22701
UniProt:Q9FFJ2
Coordinates (TAIR10) chr5:+:5649335..5650975
Molecular Weight (calculated) 28460.30 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.07
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)