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AT5G17070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein phosphatase 4 core regulatory subunit R2 (InterPro:IPR015267); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110IV7eggNOG:KOG3175EMBL:AY072428EMBL:AY114717EMBL:CP002688EnsemblPlants:AT5G17070EnsemblPlants:AT5G17070.1
entrez:831570GeneID:831570Gramene:AT5G17070.1hmmpanther:PTHR16487HOGENOM:HOG000150644InterPro:IPR015267KEGG:ath:AT5G17070
KO:K15425OMA:HPNDGVHPANTHER:PTHR16487Pfam:PF09184PhylomeDB:Q8VY58PRO:PR:Q8VY58Proteomes:UP000006548
RefSeq:NP_197209.2STRING:3702.AT5G17070.1TAIR:AT5G17070UniGene:At.31601UniProt:Q8VY58
Coordinates (TAIR10) chr5:-:5613514..5616088
Molecular Weight (calculated) 30299.00 Da
IEP (calculated) 3.87
GRAVY (calculated) -0.51
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPSSSETS EISSVVHPND GVHPNDGVHP NDGVQRQDHA VLPEVLEHPG AEQIADMSEE EVKRTLEAVA STGKFWQDWE ILKGTLSYWL KKVLSEYSEA
101: KMTDEQQKEA LGEPYSELVS RLDEALLRFD DGPPFTLQRL CEILLAARSI YPKLSKLALA LEKNLLVTSM LAISTEPQSQ TTEDPNTATS ETITSAASCD
201: PNVIESMGGD KDEIMTEVEE ADVDDAMTVD METIDEPSET MTTTSESETL SENTAAQPLS DSMVAEEGDS RLPTTCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)