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AT5G17060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.761
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ADP-ribosylation factor B1B
Curator
Summary (TAIR10)
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.
Computational
Description (TAIR10)
ADP-ribosylation factor B1B (ARFB1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor B1C (TAIR:AT3G03120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0070EMBL:AL391141EMBL:AY086691EMBL:AY093231EMBL:BT003403EMBL:CP002688
EnsemblPlants:AT5G17060EnsemblPlants:AT5G17060.1entrez:831569Gene3D:3.40.50.300GeneID:831569GO:GO:0005525GO:GO:0005622
GO:GO:0007264Gramene:AT5G17060.1hmmpanther:PTHR11711hmmpanther:PTHR11711:SF200HOGENOM:HOG000163691IntAct:Q9LFJ7InterPro:IPR005225
InterPro:IPR006689InterPro:IPR024156InterPro:IPR027417KEGG:ath:AT5G17060KO:K07977MINT:MINT-7146970OMA:APMEVCE
Pfam:PF00025Pfscan:PS51417PhylomeDB:Q9LFJ7PIR:T51561PRINTS:PR00328PROSITE:PS51417Proteomes:UP000006548
RefSeq:NP_197208.1SMR:Q9LFJ7STRING:3702.AT5G17060.1SUPFAM:SSF52540TAIR:AT5G17060tair10-symbols:ARFB1Btair10-symbols:ATARFB1B
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.43133UniProt:Q9LFJ7
Coordinates (TAIR10) chr5:+:5611056..5612639
Molecular Weight (calculated) 21834.50 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.15
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)