AT5G16910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cellulose-synthase like D2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a gene similar to cellulose synthase. Located in golgi membranes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose-synthase like D2 (CSLD2); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, response to cold, polysaccharide biosynthetic process, root hair elongation; LOCATED IN: Golgi apparatus, plasma membrane, integral to Golgi membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5561679..5565290 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128367.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1145 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASNKHFDKS RSNLSNNSDI QEPGRPPAGH SVKFAQRTSS GRYINYSRDD LDSELGGQDF MSYTVHIPPT PDNQPMDPSI SQKVEEQYVA NSMFTGGFKS 0101: NTRAHLMHKV IETEPNHPQM AGSKGSSCAI PGCDAKVMSD ERGQDLLPCE CDFKICRDCF IDAVKTGGGI CPGCKEPYKN THLTDQVDEN GQQRPMLPGG 0201: GGSKMERRLS MVKSTNKSAL MRSQTGDFDH NRWLFETTGT YGYGNAFWTK DGDFGSGKDG DGDGDGMGME AQDLMSRPWR PLTRKLKIPA GVISPYRLLI 0301: FIRIVVLALF LTWRVKHQNP DAVWLWGMSV VCELWFALSW LLDQLPKLCP INRATDLQVL KEKFETPTAS NPTGKSDLPG FDVFVSTADP EKEPPLVTAN 0401: TILSILAAEY PVEKLSCYVS DDGGALLTFE AMAEAASFAN IWVPFCRKHA IEPRNPDSYF SLKRDPYKNK VKSDFVKDRR RVKREFDEFK VRVNSLPDSI 0501: RRRSDAYHAR EEIKAMKMQR QNRDDEPMEP VKIPKATWMA DGTHWPGTWL TSASDHAKGD HAGIIQVMLK PPSDEPLHGV SEGFLDLTDV DIRLPLLVYV 0601: SREKRPGYDH NKKAGAMNAL VRASAIMSNG PFILNLDCDH YIYNSEALRE GMCFMMDRGG DRLCYVQFPQ RFEGIDPSDR YANHNTVFFD VNMRALDGLM 0701: GPVYVGTGCL FRRIALYGFN PPRSKDFSPS CWSCCFPRSK KKNIPEENRA LRMSDYDDEE MNLSLVPKKF GNSTFLIDSI PVAEFQGRPL ADHPAVKNGR 0801: PPGALTIPRE LLDASTVAEA IAVISCWYED KTEWGSRIGW IYGSVTEDVV TGYRMHNRGW KSVYCVTKRD AFRGTAPINL TDRLHQVLRW ATGSVEIFFS 0901: RNNALLASSK MKILQRIAYL NVGIYPFTSI FLIVYCFLPA LSLFSGQFIV QTLNVTFLVY LLIISITLCL LALLEIKWSG ISLEEWWRNE QFWLIGGTSA 1001: HLAAVLQGLL KVVAGVEISF TLTSKSGGDD IDDEFADLYM VKWTSLMIPP ITIIMVNLIA IAVGFSRTIY SVVPQWSKLI GGVFFSFWVL AHLYPFAKGL 1101: MGRRGRTPTI VYVWSGLVAI TISLLWVAIN PPAGNTEIGG NFSFP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)