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AT5G16880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.959
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Target of Myb protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y26GeggNOG:KOG1087EMBL:AL391141EMBL:AY056786EMBL:AY062640EMBL:AY085140EMBL:BT002553
EMBL:CP002688EnsemblPlants:AT5G16880EnsemblPlants:AT5G16880.1EnsemblPlants:AT5G16880.2entrez:831551ExpressionAtlas:Q9LFL3Gene3D:1.20.58.160
Gene3D:1.25.40.90GeneID:831551GO:GO:0005829GO:GO:0005886GO:GO:0006886Gramene:AT5G16880.1Gramene:AT5G16880.2
hmmpanther:PTHR13856hmmpanther:PTHR13856:SF93HOGENOM:HOG000243609IntAct:Q9LFL3InterPro:IPR002014InterPro:IPR004152InterPro:IPR008942
InterPro:IPR014645KEGG:ath:AT5G16880OMA:QAGMSSMPfam:PF00790Pfam:PF03127Pfscan:PS50179Pfscan:PS50909
PhylomeDB:Q9LFL3PIR:T51543PIRSF:PIRSF036948PROSITE:PS50179PROSITE:PS50909Proteomes:UP000006548Reactome:R-ATH-432720
RefSeq:NP_197190.1RefSeq:NP_850833.1SMART:SM00288SMR:Q9LFL3STRING:3702.AT5G16880.1SUPFAM:SSF48464SUPFAM:SSF89009
TAIR:AT5G16880UniGene:At.9902UniProt:Q9LFL3
Coordinates (TAIR10) chr5:+:5549658..5551274
Molecular Weight (calculated) 45313.50 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.53
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDNLMDKVT AFGERLKIGG SEVSNKISAG VSSMSFKVKE LFQGPNPTDK IVEDATTENL EEPDWDMNLE ICDMINQETI NSVELIRGIK KRIMMKQPRI
101: QYLALVLLET CVKNCEKAFS EVAAERVLDE MVKLIDDPQT VVNNRNKALM LIEAWGESTS ELRYLPVFEE TYKSLKARGI RFPGRDNESL APIFTPARST
201: PAPELNADLP QHVHEPAHIQ YDVPVRSFTA EQTKEAFDIA RNSIELLSTV LSSSPQHDAL QDDLTTTLVQ QCRQSQTTVQ RIIETAGENE ALLFEALNVN
301: DELVKTLSKY EEMNKPSAPL TSHEPAMIPV AEEPDDSPIH GREESLVRKS SGVRGGFHGG GGSGDDMMDD LDEMIFGKKN GCDSSTNPDH DPKKEQSSSK
401: NDDLIRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)