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AT5G16720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.484
endoplasmic reticulum 0.457
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF593
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G70750.1); Has 18197 Blast hits to 13174 proteins in 981 species: Archae - 171; Bacteria - 1369; Metazoa - 9112; Fungi - 1364; Plants - 1043; Viruses - 91; Other Eukaryotes - 5047 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG13eggNOG:ENOG410YA8UEMBL:AK229322EMBL:AL391147EMBL:CP002688EnsemblPlants:AT5G16720EnsemblPlants:AT5G16720.1
entrez:831534GeneID:831534Genevisible:Q0WNW4GO:GO:0016021GO:GO:0017022Gramene:AT5G16720.1hmmpanther:PTHR31448
hmmpanther:PTHR31448:SF3HOGENOM:HOG000120685InterPro:IPR007656iPTMnet:Q0WNW4KEGG:ath:AT5G16720ncoils:CoilOMA:NCMSSAK
PaxDb:Q0WNW4Pfam:PF04576Pfam:Q0WNW4PhylomeDB:Q0WNW4PIR:T51504PRIDE:Q0WNW4PRO:PR:Q0WNW4
PROSITE:PS51775ProteinModelPortal:Q0WNW4Proteomes:UP000006548RefSeq:NP_197174.2STRING:3702.AT5G16720.1TAIR:AT5G16720TMHMM:TMhelix
UniGene:At.31644UniProt:Q0WNW4
Coordinates (TAIR10) chr5:+:5494309..5496562
Molecular Weight (calculated) 77025.50 Da
IEP (calculated) 4.14
GRAVY (calculated) -0.72
Length 675 amino acids
Sequence (TAIR10)
(BLAST)
001: MAANNFATKL SRNTNRITVI LVYAFLEWLL MFFIFLNSFF TYFIVKFASF FGLKQVCLLC PKLDRIFERK PENRFTYKEL LCQNHIAELA SLSFCRTHGK
101: LSESANLCSD CSNREEEQSN IGLGFCTCCQ KSLADKPYPN YLLLKSSIWG KTLGDREDGG LILEMIDDDK FGDGFEIDRE SYPLGFFRDK AEEGKKQDQQ
201: QNGEVISDVE SYGLSLREVS EEDGLRSIIS NNSPGNEAKS RVSEDEQRND DTSNVATYGE DQISGRVEEK EEETGVADLL YDQFESKNFT GSQIEEEEED
301: REETTKELDP ETPTSVSTLF NKKLHFLARN EYAAAEDAGD GNVLVSEMDG GDPLRTIERL RETVRAEQEA LRDLYAELEE ERSASAISAN QTMAMITRLQ
401: EEKAKVQMEA LQYQRMMEEQ AEYDQEALQL LNHLMVKREK EKEQLQRELE VYRAKVLEYE SKAKNKIIVV ENDCEADDDD KEEENREEDN SSEMDVDLEK
501: ITLDCVQHMS MLGESLSEFE EERLVILDQL KVLEDRLVTM QDKESAEDPG EFSNSYEEAS NGHGGLTMAS MAKSLLPLLD AAENESEDGS QGLPESDEKN
601: FGSDSEKLEI IKQVDSVYER LQELETDGEF LKNCMSSAKK GDKGTDILKD ILQHLRDLRT IELTNTIENQ TTQEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)