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AT5G16715.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2247 (EMB2247); FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia, tRNA-binding arm (InterPro:IPR019499), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 40467 Blast hits to 37894 proteins in 3157 species: Archae - 953; Bacteria - 21019; Metazoa - 839; Fungi - 772; Plants - 400; Viruses - 0; Other Eukaryotes - 16484 (source: NCBI BLink).
Protein Annotations
EC:6.1.1.9eggNOG:COG0525eggNOG:KOG0432EMBL:AL391147EMBL:CP002688EnsemblPlants:AT5G16715EnsemblPlants:AT5G16715.1
entrez:831533Gene3D:1.10.287.380Gene3D:1.10.730.10Gene3D:3.40.50.620Gene3D:3.90.740.10GeneID:831533Genevisible:F4KE63
GO:GO:0002161GO:GO:0004832GO:GO:0005524GO:GO:0005739GO:GO:0006438GO:GO:0009507Gramene:AT5G16715.1
gramene_pathway:6.1.1.9gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_02004hmmpanther:PTHR11946hmmpanther:PTHR11946:SF76InParanoid:F4KE63InterPro:IPR001412
InterPro:IPR002300InterPro:IPR002303InterPro:IPR009008InterPro:IPR009080InterPro:IPR010978InterPro:IPR013155InterPro:IPR014729
InterPro:IPR019499iPTMnet:F4KE63KEGG:00970+6.1.1.9KEGG:ath:AT5G16715KO:K01873ncoils:CoilOMA:AINWDIK
PaxDb:F4KE63Pfam:PF00133Pfam:PF08264Pfam:PF10458PRIDE:F4KE63PRINTS:PR00986PRO:PR:F4KE63
PROSITE:PS00178ProteinModelPortal:F4KE63Proteomes:UP000006548RefSeq:NP_568337.4scanprosite:PS00178SMR:F4KE63STRING:3702.AT5G16715.1
SUPFAM:SSF46589SUPFAM:SSF47323SUPFAM:SSF50677SUPFAM:SSF52374TAIR:AT5G16715tair10-symbols:EMB2247TIGRfam:TIGR00422
TIGRFAMs:TIGR00422UniGene:At.31646UniProt:F4KE63
Coordinates (TAIR10) chr5:+:5485353..5493229
Molecular Weight (calculated) 110635.00 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.23
Length 974 amino acids
Sequence (TAIR10)
(BLAST)
001: MILKTAFSLP TPTTTLLSPS SPHQLNTLFF TRRRRRLISP SRLNSIFSQR RFSFSAAASG NNVFTSPETS KTFDFSSEEK IYKWWESQGY FKPNFDQGGS
101: PFVIPMPPPN VTGSLHMGHA MFVTLEDIMV RYNRMNGRPT LWLPGTDHAG IATQLVVEKM LASEGIKRVD LGRDEFTKRV WEWKEKYGGT ITNQIKRLGA
201: SCDWSRERFT LDEQLSRAVV EAFVKLHDKG LIYQGSYMVN WSPNLQTAVS DLEVEYSEEP GFLYHIKYRV AGSPDFLTIA TTRPETLFGD VALAVHPEDD
301: RYSKYVGQTA IVPMTYGRHV PIIADKYVDK DFGTGVLKIS PGHDHNDYLL ARKLGLPILN VMNKDATLND VAGLFCGLDR FEVREKLWAD LEEIGLAVKK
401: EPHTLRVPRS QRGGEVIEPL VSKQWFVHMD PLAEKALLAV ENKELTIIPE RFEKIYNHWL TNIKDWCISR QLWWGHRIPV WYVVGKDCEE DYIVAKSAEE
501: ALEKALEKYG KDVEIYQDPD VLDTWFSSSL WPFSTLGWPD VAAKDFNNFY PTNMLETGHD ILFFWVARMV MMGIEFTGTV PFSHVYLHGL IRDSQGRKMS
601: KSLGNVIDPL DTIKDFGTDA LRFTIALGTA GQDLNLSTER LTANKAFTNK LWNAGKFVLH SLPSLSDTSA WENLLDLKLD KEETLLSLPL PECWAVSKLH
701: ILIDSVTASY EKLFFGDVGR ETYDFFWSDF ADWYIEASKS RLYGSGGNSV SLASQAVLLY VFENILKLLH PFMPFVTEDL WQALPYRKEA LIVSPWPQNS
801: LPRNVESIKR FENLQALTRA IRNARAEYSV EPVKRISASV VGSAEVIEYI SKEKEVLALL SRLDLNNVHF SNAPPGDANL SVHLVASEGL EAYLPLAAMV
901: DISSEVQRIS KRLSKMQTEY DALITRLSSP KFVEKAPEEV VRGVKEQVEE LEEKIKLTKA RLDFLKSTTS LVSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)