AT5G16715.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2247 (EMB2247); FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia, tRNA-binding arm (InterPro:IPR019499), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 40467 Blast hits to 37894 proteins in 3157 species: Archae - 953; Bacteria - 21019; Metazoa - 839; Fungi - 772; Plants - 400; Viruses - 0; Other Eukaryotes - 16484 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5485353..5493229 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110635.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 974 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILKTAFSLP TPTTTLLSPS SPHQLNTLFF TRRRRRLISP SRLNSIFSQR RFSFSAAASG NNVFTSPETS KTFDFSSEEK IYKWWESQGY FKPNFDQGGS 101: PFVIPMPPPN VTGSLHMGHA MFVTLEDIMV RYNRMNGRPT LWLPGTDHAG IATQLVVEKM LASEGIKRVD LGRDEFTKRV WEWKEKYGGT ITNQIKRLGA 201: SCDWSRERFT LDEQLSRAVV EAFVKLHDKG LIYQGSYMVN WSPNLQTAVS DLEVEYSEEP GFLYHIKYRV AGSPDFLTIA TTRPETLFGD VALAVHPEDD 301: RYSKYVGQTA IVPMTYGRHV PIIADKYVDK DFGTGVLKIS PGHDHNDYLL ARKLGLPILN VMNKDATLND VAGLFCGLDR FEVREKLWAD LEEIGLAVKK 401: EPHTLRVPRS QRGGEVIEPL VSKQWFVHMD PLAEKALLAV ENKELTIIPE RFEKIYNHWL TNIKDWCISR QLWWGHRIPV WYVVGKDCEE DYIVAKSAEE 501: ALEKALEKYG KDVEIYQDPD VLDTWFSSSL WPFSTLGWPD VAAKDFNNFY PTNMLETGHD ILFFWVARMV MMGIEFTGTV PFSHVYLHGL IRDSQGRKMS 601: KSLGNVIDPL DTIKDFGTDA LRFTIALGTA GQDLNLSTER LTANKAFTNK LWNAGKFVLH SLPSLSDTSA WENLLDLKLD KEETLLSLPL PECWAVSKLH 701: ILIDSVTASY EKLFFGDVGR ETYDFFWSDF ADWYIEASKS RLYGSGGNSV SLASQAVLLY VFENILKLLH PFMPFVTEDL WQALPYRKEA LIVSPWPQNS 801: LPRNVESIKR FENLQALTRA IRNARAEYSV EPVKRISASV VGSAEVIEYI SKEKEVLALL SRLDLNNVHF SNAPPGDANL SVHLVASEGL EAYLPLAAMV 901: DISSEVQRIS KRLSKMQTEY DALITRLSSP KFVEKAPEEV VRGVKEQVEE LEEKIKLTKA RLDFLKSTTS LVSQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)