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AT5G16680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G02890.1); Has 6870 Blast hits to 4822 proteins in 413 species: Archae - 8; Bacteria - 605; Metazoa - 3213; Fungi - 704; Plants - 729; Viruses - 19; Other Eukaryotes - 1592 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIKBeggNOG:ENOG410YDGUEMBL:CP002688EnsemblPlants:AT5G16680EnsemblPlants:AT5G16680.1entrez:831529Gene3D:3.30.40.10
GeneID:831529GO:GO:0008270Gramene:AT5G16680.1hmmpanther:PTHR33304hmmpanther:PTHR33304:SF1InParanoid:F4KE59InterPro:IPR001965
InterPro:IPR011011InterPro:IPR013083InterPro:IPR019787iPTMnet:F4KE59KEGG:ath:AT5G16680ncoils:CoilOMA:CHYIDLE
PaxDb:F4KE59Pfscan:PS50016PRIDE:F4KE59PROSITE:PS50016ProteinModelPortal:F4KE59Proteomes:UP000006548RefSeq:NP_197170.3
SMART:SM00249SMR:F4KE59STRING:3702.AT5G16680.1SUPFAM:SSF57903TAIR:AT5G16680UniGene:At.31651UniProt:F4KE59
Coordinates (TAIR10) chr5:-:5467534..5472956
Molecular Weight (calculated) 142251.00 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.86
Length 1311 amino acids
Sequence (TAIR10)
(BLAST)
0001: MADRRVGKRQ MGQRGFSKVE SGTCNVCSAP CSSCMHRNVG FTGSKLDESS DENCHGVVGS QCSVNEDDLL PSSMVNAHKS LNNTASEASN LVNSSHDALS
0101: ENAESKETIR CSGISDDSGA AAMTSKPSLS GSRMKHKVSA SANMLDQSSN CIEDQEDGIL SADRAKQLKS GCSNNEIGNK DLADGSALNS DPIPGGSRKD
0201: EVKLESLQNP SSNHDDRVSS EKGNFKEKSR PGGNKERQEP SVEGSTRSGE NRKDGKSSKS SSSNSSAVSE SESDDSEMVE HDVKVCDICG DAGREDLLAI
0301: CSGCSDGAEH TYCMREMLDE VPEGDWLCEE CAEEAEKQKQ EAKRKRETEV TFNTYSSGKR HADKIEAAPD AKRQVVEAST GSPKKSILPR VGALSRETSF
0401: KGLDRLRGKL NHQTSFSDDT ESARSAGSQL QPPKGAFLKS SSFNCSSSKP KVQLMDDAIH PRQKTGKEDT ALDLKVGGFR NVGKSMPSRT TDAGNSGGSD
0501: SQAKMLGSKV YHSQEGKSLK QVKDRNREAN ASASSIDQKL KSRGNSSVSH ANNNRDLKGL QSDGKRGNLT KQVSNLSRNR LENSVVSGGD ISTNEKCSAS
0601: EQSSSQADCK DELPSTSCTG EGMPNHGTVA LQDGLPRSRV PREVGKKSKE AFSKRQRSSL LAGAKGLPSS QKGGQTAESS DTSGVSDSDL STTKNVKEDL
0701: NKGNRLRAAV DAALRKKPSF GKNRVLEQSD ASLVANVDSS SEKTLRNQLP SKMHKNHVSH EGLQGGHPIL WPTSDPYKQT IVTNEKQLIF PGADTIPSRL
0801: VEPEVSFPAV KPVMRDLPLV PSPVMLRSSA IPDHEFIWQG DLEVRKIINQ SAMHSGIQAH LSTLASPRVA EVVNKFPETF SLNEVPRKST WPTQFEKLGT
0901: KEAHIALFFF AKDTESYERN YKPLVDNMIK NDLALKGNLD NVDLLIFASN QLPSNCQRWN MLYFLWGVFQ GRKETNPQKN TSLPTSNVLP RDRDPKELCQ
1001: TSSPSKHLEK GSSLRESSSN GIETRNGTDA RSHENPNNRE SSIERSPSKK EDIALKVEEA GVNHIPPQVT GSNSGDSLVR KVQKVEEQEL GGRKDLPLTV
1101: MGSGIQSHGQ DNPLEKDLNS SQASHRKRPL WELSNPANEN SSAINQKVEL NNDGLCEGSP NKKLKTENGS SSLCRDTSGH DSGIMKKSPK VVFPLDLNDD
1201: SEMVDNLSPL GNDENNNNRR LISGTVPNLE LALGAEETTE ATMGLLPFLS RSSNSGEQSN NSMNKEKQKA DEEEEDDAEV AASLSLSLSF PGTEERKNVN
1301: TPLFLFRDLP R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)