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AT5G16660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ68eggNOG:ENOG41129VEEMBL:AK175334EMBL:AK175338EMBL:AK175400EMBL:AK175600EMBL:BT001205
EMBL:CP002688EnsemblPlants:AT5G16660EnsemblPlants:AT5G16660.1entrez:831528ExpressionAtlas:Q8H0X5GeneID:831528GO:GO:0009507
GO:GO:0009535GO:GO:0009536GO:GO:0009941GO:GO:0016020GO:GO:0016021Gramene:AT5G16660.1hmmpanther:PTHR34048
hmmpanther:PTHR34048:SF3ncoils:CoilOMA:SISAEYRPhylomeDB:Q8H0X5Proteomes:UP000006548RefSeq:NP_197169.2TAIR:AT5G16660
TMHMM:TMhelixUniGene:At.9926UniProt:Q8H0X5
Coordinates (TAIR10) chr5:-:5465699..5467006
Molecular Weight (calculated) 18178.20 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.48
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MASCIATAPL SLSGVSQSHY VKANGLSTTT KLSSICKTSD LTIHKKSNRT RKFSVSAGYR DGSRSGSSGD FIAGFLLGGA VFGAVAYIFA PQIRRSVLNE
101: EDEYGFEKPK QPTYYDEGLE KTRETLNEKI GQLNSAIDNV SSRLRGREKN TSSLNVPVET DPEVEATT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)